View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20293_low_3 (Length: 623)
Name: NF20293_low_3
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20293_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 22 - 613
Target Start/End: Complemental strand, 36370563 - 36369962
Alignment:
| Q |
22 |
ccgaaatcattcattctcccacccccatttcgttaataaactttgtttaaagtaaatgttgatggtgctagcaatagtcttgatgatggtttcacttgtg |
121 |
Q |
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| T |
36370563 |
ccgaaatcattcattctcccacccc-atttcgttaataaattttgtttaaagtaaatgtagatggtgctagcaatagtcttgatgatggtttcacttttg |
36370465 |
T |
|
| Q |
122 |
gttaaattatttgtgacaggttaatcaaagggttctactgcaatcttagtaattgtaatataatttgtactgaaatgtggccttttttctccatggtatt |
221 |
Q |
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| T |
36370464 |
gttaaattatttgtgacaagttaatcaaagggttctactgcaatcttagtaattgtaatataatttgtactcaaatgtggccttttttctccatggtatt |
36370365 |
T |
|
| Q |
222 |
agattgtcttgtgacttaactctttctcaagttattttttaagccaattttgccccgacaagctagttattgtacgtattcggggactcatcagggtcat |
321 |
Q |
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| T |
36370364 |
agattgtcttgtgacttaactctttctcaagttattttttaagccaattttgccccaacaagctagttattgtacggattcggggactcatcagggtcat |
36370265 |
T |
|
| Q |
322 |
tgtgcccaaaattttagtttctttttggttgttaatcctttattaaatgttcatttacatattggttataatggactttcttccattcatctagtgtgtt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36370264 |
tgtgcccaaaattttagtttctttttggttgttaatcctttattaaatgttcatttacatattggttataatggactttcttccattcatctagtgtgtt |
36370165 |
T |
|
| Q |
422 |
aataaagtgtctttttcatcaacaaaatcataatttttattcnnnnnnnnnntgttattggacaaaatgggtagcccttgtatatatttagatatc---- |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36370164 |
aataaagtgtctttttcatcaacaaaatcataatttttattaaaaaaaaaaatgttattggacaaaatgggtggcccttgtatatatttagatatcatca |
36370065 |
T |
|
| Q |
518 |
-------aggaaaaattgttcttgtattgacacccttatttcttcttaagttgcacgatacgcatgaggcagctagttcattttcttccttctctgtcct |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
36370064 |
taaaaataggaaaaattgttcttgtattgacacccttatttcttcttaagttgcacgatacgcatgaggtagctagttcattttcttccttctctgtact |
36369965 |
T |
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| Q |
611 |
atg |
613 |
Q |
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| T |
36369964 |
atg |
36369962 |
T |
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