View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20293_low_6 (Length: 390)

Name: NF20293_low_6
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20293_low_6
NF20293_low_6
[»] chr7 (2 HSPs)
chr7 (1-43)||(16798254-16798296)
chr7 (1-37)||(16797400-16797436)
[»] chr4 (4 HSPs)
chr4 (1-38)||(50637965-50638002)
chr4 (1-38)||(50638820-50638857)
chr4 (1-37)||(98418-98454)
chr4 (4-37)||(97621-97654)
[»] chr6 (2 HSPs)
chr6 (1-37)||(24948398-24948434)
chr6 (1-38)||(24949216-24949253)
[»] chr3 (2 HSPs)
chr3 (1-37)||(40828781-40828817)
chr3 (1-37)||(40829594-40829630)
[»] chr1 (2 HSPs)
chr1 (1-37)||(11744065-11744101)
chr1 (3-37)||(11744882-11744916)


Alignment Details
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16798254 - 16798296
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcacccgataaa 43  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  16798254 tgcacccttaaaaatagggaccatattaggggcaccccataaa 16798296  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16797436 - 16797400
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16797436 tgcacccttaaaaatagggaccatgttagaggcaccc 16797400  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50638002 - 50637965
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcacccg 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50638002 tgcacccttaaaaatagggaccatgttagaggcacccg 50637965  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50638820 - 50638857
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcacccg 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  50638820 tgcacccttaaaaatagggaccatattaggggcacccg 50638857  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 98418 - 98454
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  98418 tgcacccttaaaaatagggaccatattaggggcaccc 98454  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 97654 - 97621
Alignment:
Q  4 acccttaaaaatagggaccatattagaggcaccc 37  Q
    |||||||||||||||||||||||||| |||||||    
T  97654 acccttaaaaatagggaccatattaggggcaccc 97621  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24948434 - 24948398
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24948434 tgcacccttaaaaatagggaccatattagaagcaccc 24948398  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24949216 - 24949253
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcacccg 38  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  24949216 tgcacccttaaaaatagggaccatattagggccacccg 24949253  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40828817 - 40828781
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40828817 tgcacccttaaaaatagggaccatattagatgcaccc 40828781  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40829594 - 40829630
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  40829594 tgcacccttaaaaatagggaccatattaggggcaccc 40829630  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11744101 - 11744065
Alignment:
Q  1 tgcacccttaaaaatagggaccatattagaggcaccc 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11744101 tgcacccttaaaaatagggaccatattaggggcaccc 11744065  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 11744882 - 11744916
Alignment:
Q  3 cacccttaaaaatagggaccatattagaggcaccc 37  Q
    |||||||||||||||||||||||||||| ||||||    
T  11744882 cacccttaaaaatagggaccatattagaagcaccc 11744916  T

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