View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20293_low_7 (Length: 333)

Name: NF20293_low_7
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20293_low_7
NF20293_low_7
[»] chr2 (22 HSPs)
chr2 (93-318)||(21794438-21794663)
chr2 (142-319)||(18163940-18164118)
chr2 (125-319)||(43081581-43081778)
chr2 (125-319)||(45485735-45485929)
chr2 (1-129)||(5989243-5989371)
chr2 (1-129)||(45485963-45486091)
chr2 (142-269)||(302387-302513)
chr2 (124-269)||(295733-295878)
chr2 (150-318)||(13273316-13273468)
chr2 (163-269)||(39190647-39190753)
chr2 (145-214)||(29960364-29960433)
chr2 (243-314)||(45497005-45497078)
chr2 (243-314)||(45504747-45504820)
chr2 (93-136)||(43081809-43081852)
chr2 (275-317)||(5983570-5983612)
chr2 (93-129)||(5983380-5983416)
chr2 (93-129)||(13273211-13273247)
chr2 (93-129)||(18163796-18163832)
chr2 (275-318)||(1645148-1645191)
chr2 (275-318)||(4285175-4285218)
chr2 (275-318)||(5989527-5989570)
chr2 (219-269)||(29960425-29960475)
[»] chr5 (11 HSPs)
chr5 (128-319)||(9507626-9507817)
chr5 (125-319)||(9503641-9503835)
chr5 (128-319)||(32090199-32090390)
chr5 (1-136)||(9507471-9507606)
chr5 (1-132)||(9503492-9503623)
chr5 (145-318)||(34854063-34854243)
chr5 (155-316)||(3627510-3627671)
chr5 (28-120)||(28872330-28872422)
chr5 (219-269)||(690121-690171)
chr5 (275-318)||(3031580-3031623)
chr5 (275-318)||(43095199-43095241)
[»] chr4 (10 HSPs)
chr4 (1-206)||(56563055-56563260)
chr4 (145-318)||(53011169-53011343)
chr4 (2-129)||(53010974-53011101)
chr4 (124-318)||(53008256-53008449)
chr4 (160-269)||(5715318-5715427)
chr4 (150-252)||(16853976-16854078)
chr4 (145-269)||(50935665-50935784)
chr4 (125-267)||(50911862-50912000)
chr4 (93-129)||(53008159-53008195)
chr4 (93-125)||(16854128-16854160)
[»] chr3 (16 HSPs)
chr3 (125-314)||(531482-531671)
chr3 (1-129)||(32813384-32813512)
chr3 (5-120)||(27237112-27237227)
chr3 (125-258)||(4315552-4315685)
chr3 (142-269)||(28920270-28920397)
chr3 (145-239)||(32813598-32813692)
chr3 (185-318)||(47743868-47744004)
chr3 (233-312)||(55418487-55418567)
chr3 (125-195)||(55418408-55418478)
chr3 (93-136)||(531688-531731)
chr3 (278-319)||(32813716-32813757)
chr3 (93-134)||(55418362-55418403)
chr3 (93-129)||(4315482-4315518)
chr3 (93-129)||(32813091-32813127)
chr3 (98-129)||(11171985-11172016)
chr3 (275-318)||(27237725-27237767)
[»] chr6 (5 HSPs)
chr6 (93-318)||(7501317-7501560)
chr6 (125-318)||(31888483-31888677)
chr6 (142-269)||(28249226-28249353)
chr6 (46-120)||(367474-367548)
chr6 (92-129)||(31888329-31888366)
[»] chr7 (7 HSPs)
chr7 (127-316)||(22582288-22582480)
chr7 (125-257)||(45937828-45937960)
chr7 (142-254)||(297081-297193)
chr7 (145-262)||(293191-293308)
chr7 (275-318)||(35323971-35324014)
chr7 (93-125)||(22582548-22582580)
chr7 (93-129)||(35324170-35324206)
[»] chr8 (6 HSPs)
chr8 (142-316)||(11096136-11096308)
chr8 (125-269)||(37186788-37186932)
chr8 (145-269)||(37786581-37786705)
chr8 (124-239)||(37791182-37791296)
chr8 (93-126)||(14685248-14685281)
chr8 (93-136)||(11096073-11096116)
[»] scaffold0038 (1 HSPs)
scaffold0038 (142-269)||(49388-49515)
[»] chr1 (2 HSPs)
chr1 (142-269)||(44541359-44541486)
chr1 (23-96)||(28451021-28451093)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 21794663 - 21794438
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgtt 192  Q
    ||||||||||||| ||||||||||||||||||||||||||| || ||  |||||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  21794663 tattggtttagtagttcagtttagttagttttagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaacaaaccatggttagcgtgtt 21794564  T
Q  193 aaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaat 292  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  21794563 aaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgtatatatacttactcatgtgttataaatatatgacaattcattcaataaaat 21794464  T
Q  293 tacacaagtcttttactcatatctct 318  Q
    ||||||||||||||||||||||||||    
T  21794463 tacacaagtcttttactcatatctct 21794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 142 - 319
Target Start/End: Original strand, 18163940 - 18164118
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  18163940 ttctgatgtctttagaagtagagtctagtaataaccattggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtccagttgt 18164039  T
Q  242 atatatactcactcatgtgttgtaaatagatgac-aattcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18164040 atatatactcactcaagtgttgtaaatagatgacgaattcattcaataaaattacacaagtcttttactcatatctctg 18164118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 43081778 - 43081581
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    ||||||||| || ||  |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||    
T  43081778 agcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaataaacattggttagcatgttaacgaaggtagttagtttgttataggagtttg 43081679  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaa---ttcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
T  43081678 ttacaacgtccaattgtatatgtactcactcatgtgttgtaaatagatgacaatttttcattcaataaaattacacaagtcttttactcatatctctg 43081581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 125 - 319
Target Start/End: Complemental strand, 45485929 - 45485735
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    |||||||||||| ||  |||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485929 agcttctgaagtgcagcttctgatgtcttcagaaacagagtctagcaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 45485830  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||  |||||||||||||||    
T  45485829 ttacaacgtccagttgtatatatactcactcatgtgttgtaaataaattagacaattcattcaataaaattacaaaagtc--ttactcatatctctg 45485735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 5989243 - 5989371
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5989243 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaagtaaatgaattaaggaggtgtattggtt 5989342  T
Q  101 tagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||    
T  5989343 tagtaattcagtttagttagttttagctt 5989371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 45486091 - 45485963
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  45486091 gctcacaaagccattgaagctaagtagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtatttgtt 45485992  T
Q  101 tagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||    
T  45485991 tagtaattcagtttagttagttttagctt 45485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 302387 - 302513
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  302387 ttctgatgtcttcagaagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 302486  T
Q  242 atatatactcactcatgtgttgtaaata 269  Q
    ||||||||||||| ||||||||||||||    
T  302487 atatatactcact-atgtgttgtaaata 302513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 295733 - 295878
Alignment:
Q  124 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 223  Q
    |||||||||| || ||  |||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||| | |||||||||||||||||||||||    
T  295733 tagcttctgatgtgcagcttctgatgtcttcagaagcagagtctagtaaccaaccttgattagtgtgttaaccaggatagttagtttgttagaggagttt 295832  T
Q  224 gttacaatgtccagttatatatatactcactcatgtgttgtaaata 269  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  295833 gttacaatgtccagttgtatatatactcactcatgtgttgtaaata 295878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 150 - 318
Target Start/End: Original strand, 13273316 - 13273468
Alignment:
Q  150 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatac 249  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||                 |||||||| ||||||||     
T  13273316 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttac----------------gtccagttgtatatatat 13273399  T
Q  250 tcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13273400 tcactcatgtgttgtaaatatatgacaatttattcaataaaattacacaagtcttttactcatatctct 13273468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 39190753 - 39190647
Alignment:
Q  163 agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgtt 262  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  39190753 agtctagtaacaaactttggttagcatgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgtt 39190654  T
Q  263 gtaaata 269  Q
    |||||||    
T  39190653 gtaaata 39190647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 29960364 - 29960433
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgtta 214  Q
    ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29960364 tgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgtta 29960433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45497078 - 45497005
Alignment:
Q  243 tatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatat 314  Q
    ||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||||    
T  45497078 tatatactcactcatgtgttgtaaataaattagataattcattcaataaaattacacaagtcttttactcatat 45497005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 45504820 - 45504747
Alignment:
Q  243 tatatactcactcatgtgttgtaaatagat--gacaattcattcaataaaattacacaagtcttttactcatat 314  Q
    ||||||||||||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||||    
T  45504820 tatatactcactcatgtgttgtaaataaattagataattcattcaataaaattacacaagtcttttactcatat 45504747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 43081852 - 43081809
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaagt 136  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  43081852 tattagtttagtaattcagtttagttagttttagcttctgaagt 43081809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 5983570 - 5983612
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctc 317  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  5983570 caattcattcaataaaattacacaagtcttttattcatatctc 5983612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 5983380 - 5983416
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  5983380 tattggtttagtaattcagtttagttagttttagctt 5983416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 13273211 - 13273247
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  13273211 tattggtttagtaattcagtttagttagttttagctt 13273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 18163796 - 18163832
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  18163796 tattggtttagtaattcagtttagttagttttagctt 18163832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 1645148 - 1645191
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||||||| | |||||||||||||||||||||    
T  1645148 caattcattcaataaaattatataagtcttttactcatatctct 1645191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 4285175 - 4285218
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  4285175 caattcattcaataaaattacacaagtcttttattcatacctct 4285218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 5989527 - 5989570
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  5989527 caattcattcaataaaattacacaagtcttttatacatatctct 5989570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 29960425 - 29960475
Alignment:
Q  219 agtttgttacaatgtccagttatatatatactcactcatgtgttgtaaata 269  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||||||||||    
T  29960425 agtttgttacaacgtctagttgtatatatactcacttatgtgttgtaaata 29960475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 9507626 - 9507817
Alignment:
Q  128 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 227  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9507626 ttctgaagtacaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttaaaggagtttgtta 9507725  T
Q  228 caatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9507726 caacgtccagttatatatatacccactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctg 9507817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 125 - 319
Target Start/End: Original strand, 9503641 - 9503835
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||    
T  9503641 agcttctgaagtacaatttctgaagtcttcagaagcagagtctagtaataaactttggttagcgtgttaatcaagatagttagtttgttagaggagtttg 9503740  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9503741 ttacaacgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctctg 9503835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 32090199 - 32090390
Alignment:
Q  128 ttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgtta 227  Q
    ||||||||||||  |||||||||||| ||||| ||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  32090199 ttctgaagtacagcttctgatgtcttcagaagtagaatctagtaacaaacctcggttagcgtgttaaccaatgtagttagtttgttagaggagtttgtta 32090298  T
Q  228 caatgtccagttatatatatactcactcatgtgttgtaaatagatga-caattcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    ||| |||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32090299 caacgtccagttgtatatatactcactcatgtgttgtaaata-atgatgaattcattcaataaaattacacaagtcttttactcatatctctg 32090390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9507471 - 9507606
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9507471 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 9507570  T
Q  101 tagtaattcagtttagttagttttagcttctgaagt 136  Q
    |||||||||| |||||||||||||||||||||||||    
T  9507571 tagtaattcaatttagttagttttagcttctgaagt 9507606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 9503492 - 9503623
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9503492 gctcacaaagccattaaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 9503591  T
Q  101 tagtaattcagtttagttagttttagcttctg 132  Q
    |||||||||| |||||||||||||||||||||    
T  9503592 tagtaattcaatttagttagttttagcttctg 9503623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 145 - 318
Target Start/End: Original strand, 34854063 - 34854243
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtta---- 240  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||         
T  34854063 tgatgtcttcagaagcagagtctagtaataaactttggttagcgtgttaaccaaggtagttaatttgttagaggagtttgttacaacgtccagttcagtt 34854162  T
Q  241 -tatatatactcactcatgtgttgtaaatagatgacaa--ttcattcaataaaattacacaagtcttttactcatatctct 318  Q
     ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  34854163 gtatatatactcactcatgtgttgtaaataaatgacaattttcattcaataaaattacacaaatcttttactcatatctct 34854243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 316
Target Start/End: Original strand, 3627510 - 3627671
Alignment:
Q  155 agaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcact 254  Q
    |||||||||||||||||  ||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||| | ||||||||||||||    
T  3627510 agaagcagagtctagtagcaaatcttggttagcgtgttaaccaatgtagttagtttattagagaagtttgttacaacgtccagatgtatatatactcact 3627609  T
Q  255 catgtgttgtaaatagatgacaattc-attcaataaaattacacaagtcttttactcatatct 316  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||| |||||| |||||||||    
T  3627610 catgtgttgtaaataaatgagaattcaattcaataaaattacacaaatctttt-ctcatatct 3627671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 28872422 - 28872330
Alignment:
Q  28 ctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 120  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||| |||| ||||    
T  28872422 ctttgattacttgaaaatgaagttgggaatggctgaagcatctaactaaataaattaaggtggtgtactggattagtaattcattttatttag 28872330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 690121 - 690171
Alignment:
Q  219 agtttgttacaatgtccagttatatatatactcactcatgtgttgtaaata 269  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  690121 agtttgttacaatgttcagttgtatatatactcactcatgtgttgtaaata 690171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 3031580 - 3031623
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  3031580 caattcattcaataaaattacacaagtcttctactcatttctct 3031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 43095199 - 43095241
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  43095199 caattcattcaataaattt-cacaagtcttttactcatatctct 43095241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 56563055 - 56563260
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56563055 gctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaagtgtattggtt 56563154  T
Q  101 tagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaagg 200  Q
    || |||||||||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  56563155 taataattcagtttagttagttttagcttatgaagtgcagcttctgatgtcttcagaagcagagtctactaacaaaccttggttagcgtgttaaccaagg 56563254  T
Q  201 tagtta 206  Q
    ||||||    
T  56563255 tagtta 56563260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 145 - 318
Target Start/End: Original strand, 53011169 - 53011343
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 244  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||    
T  53011169 tgatgtcttcagaagcagagtctagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggattttgttaaaacgtccagttgtata 53011268  T
Q  245 tatactcac-tcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    ||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  53011269 tatactcacttcctgtgttgtaaatatatgccaattcattcaataaaattacacaagtcttttattcatatctct 53011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 53010974 - 53011101
Alignment:
Q  2 ctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 101  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53010974 ctcacaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggttt 53011073  T
Q  102 agtaattcagtttagttagttttagctt 129  Q
    ||||||||||||||||||||||||||||    
T  53011074 agtaattcagtttagttagttttagctt 53011101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 53008256 - 53008449
Alignment:
Q  124 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 223  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  53008256 tagcttctgaagtacagcttctgatgtcttcagaagcagagtctagtaacaaacattggttagcgtattaaccaaactagttagtttgttagaggagttt 53008355  T
Q  224 gttacaatgtccagttatatatatactcac-tcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    ||||||| |||||||| ||||||||||||| || ||||||||||||| ||| ||||| |||||||||||||  |||||||||||| ||||||||||    
T  53008356 gttacaacgtccagttgtatatatactcacttcctgtgttgtaaatatatgccaattaattcaataaaatt--acaagtcttttattcatatctct 53008449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 5715318 - 5715427
Alignment:
Q  160 cagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgt 259  Q
    ||||||||||||| ||||||||||||||||||||||||   || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5715318 cagagtctagtaacaaaccttggttagcgtgttaaccagaataattagtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgt 5715417  T
Q  260 gttgtaaata 269  Q
    ||||||||||    
T  5715418 gttgtaaata 5715427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 16854078 - 16853976
Alignment:
Q  150 tctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatac 249  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  16854078 tcttcagaagcagagtctagtaacaaaccttggttagcgtgttaaccaacgtagttagtttgttagaggaatttgttacaacgtccagttgtatatatac 16853979  T
Q  250 tca 252  Q
    |||    
T  16853978 tca 16853976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 50935665 - 50935784
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 244  Q
    ||||||||| |||||  ||||||||||| |||| |||||||||||||||||||||||||||||||    |||||||||||||||||  || |||| ||||    
T  50935665 tgatgtcttcagaagttgagtctagtaacaaac-ttggttagcgtgttaaccaaggtagttagtt----agaggagtttgttacaacatctagttgtata 50935759  T
Q  245 tatactcactcatgtgttgtaaata 269  Q
    |||||||||||||||||||||||||    
T  50935760 tatactcactcatgtgttgtaaata 50935784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 50911862 - 50912000
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagca-gagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 223  Q
    ||||||||| || ||  |||||||||||| ||||||  ||||||||||| |||| ||||||||||| |||||||||||||||||||    ||||||||||    
T  50911862 agcttctgatgtgcagattctgatgtcttcagaagcttgagtctagtaacaaac-ttggttagcgtattaaccaaggtagttagtt----agaggagttt 50911956  T
Q  224 gttacaatgtccagttatatatatactcactcatgtgttgtaaa 267  Q
    |||||||   |||||| |||||||||||||||||||||||||||    
T  50911957 gttacaacacccagttgtatatatactcactcatgtgttgtaaa 50912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 53008159 - 53008195
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  53008159 tattggtttagtaattcagtttagttagttttagctt 53008195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 16854160 - 16854128
Alignment:
Q  93 tattggtttagtaattcagtttagttagtttta 125  Q
    ||||||||||||||||||||||| |||||||||    
T  16854160 tattggtttagtaattcagtttaattagtttta 16854128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 125 - 314
Target Start/End: Complemental strand, 531671 - 531482
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    |||||||||  | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  531671 agcttctgatatgcaacttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaacaaaggtagttagttttttagaggagtttg 531572  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatat 314  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  531571 ttacaacgtccagttgtatatatactcactcatgtgttgtaaatatatgacaattcattcaatgaaattacacaagtcttttactcatat 531482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32813384 - 32813512
Alignment:
Q  1 gctcacaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtt 100  Q
    |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32813384 gctcgcaaagccattgaagctaagcagctttgattacttgaagaagaagttaggaatggttgaagcatctaactaaatgaattaaggaggtgtattggtt 32813483  T
Q  101 tagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||    
T  32813484 tagtaattcagtttagttagttttagctt 32813512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 27237112 - 27237227
Alignment:
Q  5 acaaagccattaaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagt 104  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27237112 acaaagccattgaagctaagcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattagtttagt 27237211  T
Q  105 aattcagtttagttag 120  Q
    ||||||||||||||||    
T  27237212 aattcagtttagttag 27237227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 4315552 - 4315685
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    |||||||||||| ||  |||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4315552 agcttctgaagtgcagcttctgatggcttcagaagcagagtctagtaacaaacgttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 4315651  T
Q  225 ttacaatgtccagttatatatatactcactcatg 258  Q
    |||||| |||||||| ||||||||||||||||||    
T  4315652 ttacaacgtccagttgtatatatactcactcatg 4315685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 28920397 - 28920270
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| ||||||| ||||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||| || |||||||| |    
T  28920397 ttctgatgtcttcagaagcatagtctagtaatcaatcttggttagcatgttaaccagggtagttagtttattagaggagtttgttataacgtccagttgt 28920298  T
Q  242 atatatactcactcatgtgttgtaaata 269  Q
    |||||||||||||||| |||||||||||    
T  28920297 atatatactcactcatatgttgtaaata 28920270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 32813598 - 32813692
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagtt 239  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  32813598 tgatgtctttagaagcagaatctagtaacaaaccttggttagcgtgttaacgaaggtagttagtttgttagaggagtttgttacaacgtccagtt 32813692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 47743868 - 47744004
Alignment:
Q  185 agcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgac-aattc-at 282  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||| |||||||||||||||||||| ||||| ||||| ||    
T  47743868 agcgtgttaaccaaggtagttagtttgttacaggagtttgttacaacgtctagttgtaaatatattcactcatgtgttgtaaata-atgacgaattcaat 47743966  T
Q  283 tcaataaaa--ttacacaagtcttttactcatatctct 318  Q
    |||||||||  |||||||| |||||||||| |||||||    
T  47743967 tcaataaaaatttacacaaatcttttactcgtatctct 47744004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 55418487 - 55418567
Alignment:
Q  233 tccagttatatatatactcactcatgtgttgtaaatagatgacaattca-ttcaataaaattacacaagtcttttactcat 312  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||||||||||||||||    
T  55418487 tccagttgtatatatactcactcatgtattgtaaatatacgacgattcatttcaataaaattacacaagtcttttactcat 55418567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 55418408 - 55418478
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaac 195  Q
    ||||||| ||| |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55418408 agcttctaaagaacagcttctgatgtcttcagaagcagagtctagtaataaaccttggttagcgtgttaac 55418478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 531731 - 531688
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaagt 136  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  531731 tattggtttagtaattcagtatagttagttttagcttctgaagt 531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 32813716 - 32813757
Alignment:
Q  278 ttcattcaataaaattacacaagtcttttactcatatctctg 319  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  32813716 ttcattcaataaaattacacaagtctgttactcatatctctg 32813757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 55418362 - 55418403
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaa 134  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  55418362 tattggtttagtaatttagtttagttagttttagcttctgaa 55418403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 4315482 - 4315518
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  4315482 tattggtttagtaattcagtttagttagttttagctt 4315518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 129
Target Start/End: Original strand, 32813091 - 32813127
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    |||| ||||||||||||||||||||||||||||||||    
T  32813091 tattagtttagtaattcagtttagttagttttagctt 32813127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 11171985 - 11172016
Alignment:
Q  98 gtttagtaattcagtttagttagttttagctt 129  Q
    ||||||||||||||||||||||||||||||||    
T  11171985 gtttagtaattcagtttagttagttttagctt 11172016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 27237725 - 27237767
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  27237725 caattcattcaataaattt-cacaagtcttttactcatatctct 27237767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 93 - 318
Target Start/End: Complemental strand, 7501560 - 7501317
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaagtacaatttctgatgtctttaga------------------agcagagtctagtaata 174  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||                  ||||||||||||||| |    
T  7501560 tattgctttagtaattcagtttagttagttttagcttctgaagtacaacttctgatgtcttcagagcttctgatgtcttcacaagcagagtctagtaaca 7501461  T
Q  175 aaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatatatatactcactcatgtgttgtaaatagatga 274  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||| |    
T  7501460 aaccttggttagcgtgttaaccaagatagttagtttgttagaggagtttgttacaacgcccagttgtttatatactcactcatgtgttgtaaatagataa 7501361  T
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7501360 caattcattcaataaaattacacaagtcttttactcatatctct 7501317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 125 - 318
Target Start/End: Original strand, 31888483 - 31888677
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    ||||||| |||| ||  |||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  31888483 agcttctaaagtgcagcttctgatgtcttcagaagcatagtctagtaacaaaccttggttagcgtgttaactaaggtagttagtttgttagagaagtttg 31888582  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgac-aattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    |||||| || || || ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||    
T  31888583 ttacaacgtgcaattgtatatatactcactcatgtgttgtaaatagatgacgattttattcaataaaattacacaattcttttactcatatctct 31888677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 28249226 - 28249353
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  28249226 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 28249325  T
Q  242 atatatactcactcatgtgttgtaaata 269  Q
    ||||||||||||||||||||||||||||    
T  28249326 atatatactcactcatgtgttgtaaata 28249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 367548 - 367474
Alignment:
Q  46 gaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtattggtttagtaattcagtttagttag 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  367548 gaagttgggaatggctgaagcatctaactaaatgaattaaggaggtgtattgattaagtaattcattttagttag 367474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 31888329 - 31888366
Alignment:
Q  92 gtattggtttagtaattcagtttagttagttttagctt 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31888329 gtattggtttagtaattcagtttagttagttttagctt 31888366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 127 - 316
Target Start/End: Complemental strand, 22582480 - 22582288
Alignment:
Q  127 cttctgaagtacaatttctgatgtctttagaagcag---agtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 223  Q
    |||||||||||||| |||||||||||| | ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22582480 cttctgaagtacaacttctgatgtcttcaaaagcagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 22582381  T
Q  224 gttacaatgtccagttatatatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatct 316  Q
    | ||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  22582380 ggtacaacgtccagttgtatatatactcactcatgtgttgtaaataaatgagaattcattcaataaaattacacaagccttttactcatatct 22582288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 45937828 - 45937960
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    |||||||||||| ||  || ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45937828 agcttctgaagtgcagcttttgatgtcttcaaaagcagggtctagtaataaaccttggttagcgtgttaaccaaggtagttagttagttagaggagtttg 45937927  T
Q  225 ttacaatgtccagttatatatatactcactcat 257  Q
    |||||| |||||||| |||||||||||||||||    
T  45937928 ttacaacgtccagttgtatatatactcactcat 45937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 254
Target Start/End: Original strand, 297081 - 297193
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| |||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |    
T  297081 ttctgatgtcttcagaaactgagtttagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaacgtctagttgt 297180  T
Q  242 atatatactcact 254  Q
    |||||||||||||    
T  297181 atatatactcact 297193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 145 - 262
Target Start/End: Original strand, 293191 - 293308
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 244  Q
    ||||||||| |||| | |||| |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  293191 tgatgtcttcagaaactgagtttagtaacaaacattggttagcgtgttaaccaaggtagttagtttgttagaggggtttgttacaacgtctagttgtata 293290  T
Q  245 tatactcactcatgtgtt 262  Q
    ||||||||||||| ||||    
T  293291 tatactcactcatatgtt 293308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 35324014 - 35323971
Alignment:
Q  275 caattcattcaataaaattacacaagtcttttactcatatctct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35324014 caattcattcaataaaattacacaagtcttttactcatatctct 35323971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 22582580 - 22582548
Alignment:
Q  93 tattggtttagtaattcagtttagttagtttta 125  Q
    |||||||||||||||||||||||||||||||||    
T  22582580 tattggtttagtaattcagtttagttagtttta 22582548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 35324206 - 35324170
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagctt 129  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  35324206 tattggtttagtatttcagtttagttaattttagctt 35324170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 142 - 316
Target Start/End: Original strand, 11096136 - 11096308
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| |||||  ||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |    
T  11096136 ttctgatgtcttcagaag--gagtctagtaacaaactttggttagcgtgttaatcaaggtagttagtttgttagaggagtttgttacaacgttcagttgt 11096233  T
Q  242 atatatactcactcatgtgttgtaaatagatgacaattcattcaataaaattacacaagtcttttactcatatct 316  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11096234 atatatactcactcatgtgttgtaaatatatgacaattcattcaataaaattacacaagtcttttactcatatct 11096308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 125 - 269
Target Start/End: Complemental strand, 37186932 - 37186788
Alignment:
Q  125 agcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttg 224  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||||||| |||| ||  |||||||||| ||||||||||||||||||||||||||    
T  37186932 agcttctgaagtgcagcttctgatgtctttagaagcagagtctagtaataaacattggctatagtgttaaccagggtagttagtttgttagaggagtttg 37186833  T
Q  225 ttacaatgtccagttatatatatactcactcatgtgttgtaaata 269  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||    
T  37186832 ttacaacgtctagttgtatatatactcactcatgtgttgtaaata 37186788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 37786705 - 37786581
Alignment:
Q  145 tgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttatata 244  Q
    ||||||||| | ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||    
T  37786705 tgatgtcttcataagcagagtctagtaaccaaccttggttagcgtgttaaccagggtagttagtttgttagaggactttgttacaacgtccagttgtata 37786606  T
Q  245 tatactcactcatgtgttgtaaata 269  Q
    |||| ||||||||||||||||||||    
T  37786605 tatattcactcatgtgttgtaaata 37786581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 37791296 - 37791182
Alignment:
Q  124 tagcttctgaagtacaatttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagttt 223  Q
    |||||||||| || ||  |||||||||||| ||||||||||| ||||||  ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37791296 tagcttctgatgtgcagcttctgatgtcttcagaagcagagt-tagtaaccaaccttgattagcatgttaaccaaggtagttagtttgttagaggagttt 37791198  T
Q  224 gttacaatgtccagtt 239  Q
    ||||||| || |||||    
T  37791197 gttacaacgttcagtt 37791182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 14685248 - 14685281
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttag 126  Q
    ||||||||||||||||||||||||||||||||||    
T  14685248 tattggtttagtaattcagtttagttagttttag 14685281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 11096073 - 11096116
Alignment:
Q  93 tattggtttagtaattcagtttagttagttttagcttctgaagt 136  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||    
T  11096073 tattgatttaataattcagtttagttagttttaacttctgaagt 11096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 49388 - 49515
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |    
T  49388 ttctgatgtcttcagaagcagggtctagtaacaaaccttggttagcgtgttaaccaaggtagttagtttgttagagaagtttgttacaacgtctagttgt 49487  T
Q  242 atatatactcactcatgtgttgtaaata 269  Q
    ||||||||||||||||||||||||||||    
T  49488 atatatactcactcatgtgttgtaaata 49515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 44541486 - 44541359
Alignment:
Q  142 ttctgatgtctttagaagcagagtctagtaataaaccttggttagcgtgttaaccaaggtagttagtttgttagaggagtttgttacaatgtccagttat 241  Q
    ||||| |||||| ||||||| |||||| |||  ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  44541486 ttctgttgtcttcagaagcatagtctaataaccaaccttgattagtgtgttaaccagggtagttagtttgttagaggagtttgttacaatgtccagttgt 44541387  T
Q  242 atatatactcactcatgtgttgtaaata 269  Q
    ||||||||||||||||||||||||||||    
T  44541386 atatatactcactcatgtgttgtaaata 44541359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 28451093 - 28451021
Alignment:
Q  23 agcaactttgattacttgaagaagaagttaggaatggctgaagcatctaactaaatgaattaaggaggtgtatt 96  Q
    ||||||||||| ||||||| ||| ||  ||||||||| |||||   |||||||| |||||||||||||||||||    
T  28451093 agcaactttgaatacttgaggaacaatctaggaatggttgaagtcactaactaa-tgaattaaggaggtgtatt 28451021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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