View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20293_low_8 (Length: 323)

Name: NF20293_low_8
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20293_low_8
NF20293_low_8
[»] chr7 (1 HSPs)
chr7 (11-307)||(6394191-6394487)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 6394487 - 6394191
Alignment:
Q  11 caaaggaatgaacaattttaaaagggnnnnnnntaattttctttttacgtatgtgttgttgttttgaattatgattcaaattccaactaagagaacatgt 110  Q
    ||||||||||||||||||||||||||       |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394487 caaaggaatgaacaattttaaaagggaaaaaaataatttcctttttacatatgtgttgttgttttgaattatgattcaaattccaactaagagaacatgt 6394388  T
Q  111 gtttggatcacatggcccccactgtctcattttaagagaacattcacaaccaaaatgtgtttccttacattctgtagagttgctttctgctggttcataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394387 gtttggatcacatggcccccactgtctcattttaagagaacattcacaaccaaaatgtgtttccttacattctgtagagttgctttctgctggttcataa 6394288  T
Q  211 tatgttgttgtttgtctgttctttagttgattgttttgaatttggtgacggttgctttaaatggatttggattttggtttcacaagctagttgtttc 307  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394287 tatgttgttgtttgtctgttcttttgctgattgttttgaatttggtgacggttgctttaaatggatttggattttggtttcacaagctagttgtttc 6394191  T

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