View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20293_low_9 (Length: 297)
Name: NF20293_low_9
Description: NF20293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20293_low_9 |
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| [»] chr1 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 31770997 - 31770711
Alignment:
| Q |
11 |
catcatcgttgaccaccgcgtcggaaaactgatgttattatcacccctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccct |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770997 |
catcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccct |
31770898 |
T |
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| Q |
111 |
cttcttctccctctgtcacttttgattatacatcttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccan |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31770897 |
cttcttctccctctgtcacttttgattatacatcttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccat |
31770798 |
T |
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| Q |
211 |
nnnnnngttgctgttatttctgtactgcatatcttcctgatgtggtttctttggttttttcttaccagcaccttcgatacaaggttc |
297 |
Q |
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|||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31770797 |
ttttttgttgctgtaatttctgtactgtatatcttcctgatgttgtttttttggttttttcttaccagcaccttcgatacaaggttc |
31770711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 7608009 - 7607896
Alignment:
| Q |
11 |
catcatcgttgaccaccgcgtcggaaaactgatgttattatcacccctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccct |
110 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7608009 |
catcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccct |
7607910 |
T |
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| Q |
111 |
cttcttctccctct |
124 |
Q |
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|||||||||||||| |
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| T |
7607909 |
cttcttctccctct |
7607896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 14184882 - 14184939
Alignment:
| Q |
99 |
ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaatgagaa |
156 |
Q |
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| T |
14184882 |
ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaattagaa |
14184939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 14184848 - 14184885
Alignment:
| Q |
27 |
cgcgtcggaaaactgatgttattatcacccctctccat |
64 |
Q |
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| T |
14184848 |
cgcgtaggaaaactgatgttattatcacacctctccat |
14184885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 27 - 297
Target Start/End: Original strand, 41810334 - 41810604
Alignment:
| Q |
27 |
cgcgtcggaaaactgatgttattatcacccctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt |
126 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810334 |
cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt |
41810433 |
T |
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| Q |
127 |
cacttttgattatacatcttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtatgagtctcccannnnnnngttgctgtta |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |
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| T |
41810434 |
cacttttgattatacatcttcaaatgagaagtattgtagatatattgctttactaccatgctttgacgggtatgagtctcccatttttttgttgctgtaa |
41810533 |
T |
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| Q |
227 |
tttctgtactgcatatcttcctgatgtggtttctttggttttttcttaccagcaccttcgatacaaggttc |
297 |
Q |
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||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41810534 |
tttctgtactgtatatcttcctgatgttgtttttttggttttttcttaccagcaccttcgatacaaggttc |
41810604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 52130955 - 52131061
Alignment:
| Q |
50 |
atcacccctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaa |
149 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52130955 |
atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcatcaa |
52131054 |
T |
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| Q |
150 |
atgagaa |
156 |
Q |
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||||||| |
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| T |
52131055 |
atgagaa |
52131061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 52311539 - 52311470
Alignment:
| Q |
58 |
tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt |
126 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||| |
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| T |
52311539 |
tctccattatttgttcaataccgatgcaaactctacagagccccatgttgccctcttcttctccctctgt |
52311470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 53689436 - 53689493
Alignment:
| Q |
67 |
ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct |
124 |
Q |
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| T |
53689436 |
ttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttcttcctct |
53689493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 37362487 - 37362394
Alignment:
| Q |
58 |
tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgattatacatcttcaa |
149 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37362487 |
tctccattatttgttcaatactgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaacatcttcaa |
37362394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 1971305 - 1971361
Alignment:
| Q |
64 |
ttattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctcc |
120 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1971305 |
ttattgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctcc |
1971361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 7841462 - 7841512
Alignment:
| Q |
67 |
ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct |
118 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
7841462 |
ttgttcaatacc-atgcaaactctacagaaccccatgcttccctcttcttct |
7841512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 19962262 - 19962318
Alignment:
| Q |
75 |
tacccatgcaaactctacagtgccccat--gcttccctcttcttctccctctgtcac |
129 |
Q |
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|||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |
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| T |
19962262 |
taccgatgcaaactctacagagccccatatgcttccctcttcttctccctccgtcac |
19962318 |
T |
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