View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_high_2 (Length: 434)
Name: NF20294_high_2
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 1947900 - 1948185
Alignment:
| Q |
21 |
gttgattaattgaagaatatgcatattttttatgataaggaagatttatttcagctttttcaagttatttaaaataaggtttaattaatcaataaatctc |
120 |
Q |
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| T |
1947900 |
gttgattaattgaagaatatgcatattttttatgataaggaagatttatttcagctttttcaagttatttaaaataaggtttaattaatcaataaatctc |
1947999 |
T |
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| Q |
121 |
ttaactatttgagaatttttaaatatgtcattgaactaaaaaagttgtaatcaaatggttgaactattaannnnnnnnnnccaactgagttcttcagtta |
220 |
Q |
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| T |
1948000 |
ttaactatttgagaatttttaaataggtcattgaactaaaaaagttgtaatcaaatggttgaactattaa--ttttttttccaactgggttcttcagtta |
1948097 |
T |
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| Q |
221 |
aaaaagccgttggtcaactgacttggaccgtgacagggcaactagattttacacatgagcacttaatttccacaccattaaatcattt |
308 |
Q |
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| T |
1948098 |
aaaaagccgtaggtcaactgtcttggaccgtgacagagcaactagattttatacatgagcacttaatttccacaccattaaatcattt |
1948185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 1948436 - 1948552
Alignment:
| Q |
303 |
tcatttcattaccaaatttt-aaagtacaaatccataataacaaggtccgtgaaattaagaaaaataaataatagaaacatacaattattcagtgtcagt |
401 |
Q |
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| T |
1948436 |
tcatttcattaccaaatttttaaagtacaaatccataataacaaggtccgtgaaattgagaaaaataaataattgaaacatacaattattcagtgtcagt |
1948535 |
T |
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| Q |
402 |
acaataagtaaatgaca |
418 |
Q |
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| T |
1948536 |
acaataagtaaatgaca |
1948552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 12547913 - 12547958
Alignment:
| Q |
123 |
aactatttgagaatttttaaatatgtcattgaactaaaaaagttgt |
168 |
Q |
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| T |
12547913 |
aactatttgagaatttttaaataggtccttaaactaaaaaaattgt |
12547958 |
T |
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