View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_high_6 (Length: 355)
Name: NF20294_high_6
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 337
Target Start/End: Original strand, 3341234 - 3341562
Alignment:
| Q |
9 |
gattattcttggagccatgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaatagcagtgaagatatattgagtaaggatg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3341234 |
gattatgcttggagccatgcagtgatatctgatgaaactcacaaattacttaaaacaaattgtgaatttaaaagcagtgaagatatattgagtaaggatg |
3341333 |
T |
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| Q |
109 |
atgtatgtaataaaggattagatgaaatgttcaagcagtacaatgaaattgatatctacagtctttacacccctacttgcttagccaacaaggggatttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3341334 |
atgtatgtaataaaggattagatgaaatgttcaagcagtacaatgaaattgatatctacagtctctacacccctacttgcttagccaacaaggggatttc |
3341433 |
T |
|
| Q |
209 |
aaaaccaatgcaaaaggttatgaagcgttcatcaaacaaagacatggtgagattagaaaattttatttttatcagaatctctctttaagtgtttttaggc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3341434 |
aaaaccaatgcaaaaggttatgaagcgttcatcaaacaaagacatggtgagattagaaaattttatttttatcagagtctctctttaagtgtttttaggc |
3341533 |
T |
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| Q |
309 |
ttaaaaacttctaacactaccttgtgcat |
337 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
3341534 |
ttaaaaacttgtaacactaccttgtgcat |
3341562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 3333503 - 3333540
Alignment:
| Q |
9 |
gattattcttggagccatgcagtgatatctgatgaaac |
46 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| |
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| T |
3333503 |
gattatgcttggagtcatgcagtgatatctgatgaaac |
3333540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8349318 - 8349358
Alignment:
| Q |
129 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
169 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| |
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| T |
8349318 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
8349358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 42820303 - 42820263
Alignment:
| Q |
129 |
gatgaaatgttcaagcagtacaatgaaattgatatctacag |
169 |
Q |
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|||||| || |||| |||||||||||||||||||||||||| |
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| T |
42820303 |
gatgaagtgctcaaacagtacaatgaaattgatatctacag |
42820263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 35793881 - 35793837
Alignment:
| Q |
9 |
gattattcttggagccatgcagtgatatctgatgaaactcacaaa |
53 |
Q |
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|||||| | ||||| ||||| |||||||||||||||||||||||| |
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| T |
35793881 |
gattatgcctggagtcatgctgtgatatctgatgaaactcacaaa |
35793837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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