View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_high_7 (Length: 341)
Name: NF20294_high_7
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 24211020 - 24211313
Alignment:
| Q |
19 |
tttgggaccaaccaccacaccagagttttccaatacttacttaccattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttcct |
118 |
Q |
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| T |
24211020 |
tttgggaccaaccaccacaccagagttttccaatactcacttaccattcatttgatttcatcaaataaccacacaacttaaatgaacattcacattttct |
24211119 |
T |
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| Q |
119 |
taacccattattgtcttctcgcttcaatttcttcttggttccatggtacataccacccatttcacaccccaagattaacttttgtggtcttcgtccaaca |
218 |
Q |
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| T |
24211120 |
taacccattattgtcttctcgcttcaatttcttcttggttccatggtacataccacccatttcacaccccaagattaacttttgtggtctttgtccaaca |
24211219 |
T |
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| Q |
219 |
ccatgatcgaatttgtcaatatttaatgttaatttggtcattgatgctttgatggacccaattattcaaatcatctctaactttatatttcaca |
312 |
Q |
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| T |
24211220 |
ccatgatcgaatttgtcaatatttaatgttaatttggtcattgatgctttgatggacccaattattcaaatcatctctaactttatatttcaca |
24211313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 24205747 - 24206007
Alignment:
| Q |
49 |
caatacttacttaccattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttccttaacccattattgtcttctcgcttcaattt |
148 |
Q |
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| T |
24205747 |
caatactcactgaccaatcatttgatttcaaaaaataaaaacataacctaaatgaacatgcacatttctttaatgatgtgtcttcttctcacatcaattt |
24205846 |
T |
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| Q |
149 |
cttcttggttccatggtacataccacccatttcacacccc-aagattaacttttgtggtcttcgtccaacaccatgatcgaatttgtcaatatttaatgt |
247 |
Q |
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| T |
24205847 |
cttcttggttccatggtacaaaccacccatttcatacccccaagattaacttatgtggtcttcgtccaccaccatgataggatttgtcaataattaagat |
24205946 |
T |
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| Q |
248 |
taatttggtcattgatgctt--tgatggacccaattattcaaatcatctctaactttatat |
306 |
Q |
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| T |
24205947 |
aaatctgatcattgatgcttgctgacgagcccagttattcaaatcacctctaactttatat |
24206007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 55974315 - 55974200
Alignment:
| Q |
63 |
cattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttccttaacccattattgtcttctcgcttcaatttcttcttggttccat |
162 |
Q |
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| T |
55974315 |
cattcatttgatttcaacaaataaccacataacctaaatgagcattcacagttccttga-ccat-----gcgtcttgcttcacgttcttcttgtttcctt |
55974222 |
T |
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| Q |
163 |
ggtacataccacccatttcaca |
184 |
Q |
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| T |
55974221 |
ggtacagaccacccatttcaca |
55974200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 55981375 - 55981323
Alignment:
| Q |
63 |
cattcatttgatttcatcaaataaccacacaacttaaatgaacattcacatttc |
116 |
Q |
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| T |
55981375 |
cattcatttgatttcaacaaataacctca-aacataaacgaacattcacatttc |
55981323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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