View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20294_low_17 (Length: 218)

Name: NF20294_low_17
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20294_low_17
NF20294_low_17
[»] chr7 (14 HSPs)
chr7 (14-198)||(10497989-10498173)
chr7 (14-198)||(10503018-10503202)
chr7 (17-107)||(13336699-13336789)
chr7 (17-107)||(10532879-10532969)
chr7 (129-198)||(13336291-13336360)
chr7 (17-104)||(10532593-10532680)
chr7 (17-132)||(13344568-13344683)
chr7 (44-132)||(10532661-10532749)
chr7 (14-104)||(10500066-10500157)
chr7 (14-104)||(10505095-10505186)
chr7 (14-132)||(13344331-13344449)
chr7 (15-132)||(10500138-10500255)
chr7 (15-132)||(10505167-10505284)
chr7 (20-104)||(13344503-13344587)
[»] chr3 (1 HSPs)
chr3 (14-132)||(35456989-35457110)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 10498173 - 10497989
Alignment:
Q  14 cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10498173 cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt 10498074  T
Q  114 ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgtt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10498073 ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgtt 10497989  T

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Target: chr7; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 10503202 - 10503018
Alignment:
Q  14 cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt 113  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10503202 cagaggaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactatggatt 10503103  T
Q  114 ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgtt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10503102 ttagacgagctgcacctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgtt 10503018  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 13336789 - 13336699
Alignment:
Q  17 agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta 107  Q
    |||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13336789 agaaggaatttaggagtcccagatagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta 13336699  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 10532969 - 10532879
Alignment:
Q  17 agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta 107  Q
    |||||||||||| || |||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10532969 agaaggaatttatgaaccccaggaagtttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaacta 10532879  T

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Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 13336360 - 13336291
Alignment:
Q  129 ctatttaggtaggaggtcatggccacacttatatttggtcctaataatgtttgcacacatagtattcgtt 198  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13336360 ctatttaggaaggaggtcatggccacagttatatttggtcctaataatgtttgcacacatagtattcgtt 13336291  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 10532593 - 10532680
Alignment:
Q  17 agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa 104  Q
    |||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||    
T  10532593 agaaggaatttaggagccccaggaagtttagactgaacatgtcctcaaacatcttcttcactctaaccataggtggagctcgcctaaa 10532680  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 13344683 - 13344568
Alignment:
Q  17 agaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatttta 116  Q
    ||||||||||| |||| ||||  ||  ||||| | ||||||||||||||||||||||||| ||||||||||  ||| |||||||||||||  ||||||||    
T  13344683 agaaggaattttggagacccaagaagtttagatttaatatgtcctcaaacatcttcttcattctaaccattaatggagctcgtctaaacttaggatttta 13344584  T
Q  117 gacgagctgcacctat 132  Q
    ||||||||||| ||||    
T  13344583 gacgagctgcaactat 13344568  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 10532749 - 10532661
Alignment:
Q  44 ttagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattttagacgagctgcacctat 132  Q
    ||||||||||  |||||||||||||||| | |||||||||||||||| |||||||||||||||| | ||||||| |||||| |||||||    
T  10532749 ttagactgaacgtgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaagaattttaggcgagctccacctat 10532661  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 10500066 - 10500157
Alignment:
Q  14 cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa 104  Q
    |||||||||| ||||||| |||| |||||  |||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  10500066 cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa 10500157  T

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Target: chr7; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 10505095 - 10505186
Alignment:
Q  14 cagagaaggaatttaggagcccc-agaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa 104  Q
    |||||||||| ||||||| |||| |||||  |||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  10505095 cagagaaggagtttaggatcccccagaaagtttagactgaacatgtcctcaaacatcttctccactctaaccataggtggagctcgtctaaa 10505186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 13344449 - 13344331
Alignment:
Q  14 cagagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggatt 113  Q
    |||||||| |||| |||| |||||  ||  ||||||||||  |||||||||||||||| | |||||||||||||||| ||||||||||||||||   |||    
T  13344449 cagagaagtaattgaggaaccccatgaagtttagactgaacctgtcctcaaacatcttatacactctaaccattggtagggctcgtctaaactaattatt 13344350  T
Q  114 ttagacgagctgcacctat 132  Q
    |||| |||||| |||||||    
T  13344349 ttaggcgagctccacctat 13344331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 10500255 - 10500138
Alignment:
Q  15 agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt 114  Q
    ||||||| |||| ||||||||||  ||  |||||| |||  |||| ||||||||| | | |||||||||||||||| | |||||||||||||| ||||||    
T  10500255 agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt 10500156  T
Q  115 tagacgagctgcacctat 132  Q
    |||||||||| |||||||    
T  10500155 tagacgagctccacctat 10500138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 10505284 - 10505167
Alignment:
Q  15 agagaaggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaactacggattt 114  Q
    ||||||| |||| ||||||||||  ||  |||||| |||  |||| ||||||||| | | |||||||||||||||| | |||||||||||||| ||||||    
T  10505284 agagaagtaattgaggagccccatgaagtttagaccgaacgtgtcgtcaaacatcatatacactctaaccattggtagagctcgtctaaactaaggattt 10505185  T
Q  115 tagacgagctgcacctat 132  Q
    |||||||||| |||||||    
T  10505184 tagacgagctccacctat 10505167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 13344503 - 13344587
Alignment:
Q  20 aggaatttaggagccccagaaacattagactgaatatgtcctcaaacatcttcttcactctaaccattggtggggctcgtctaaa 104  Q
    ||||||||| ||||||||| ||  ||||||||||  |||||||||| ||||||| |||||||||||| | ||  |||||||||||    
T  13344503 aggaatttatgagccccaggaagtttagactgaacgtgtcctcaaatatcttctccactctaaccatagttgcagctcgtctaaa 13344587  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 35457110 - 35456989
Alignment:
Q  14 cagagaaggaatttaggagcc-ccagaaacattagactgaatatgtcctcaaacatcttcttcactcta----accattggtggggctcgtctaaactac 108  Q
    |||| |||||||| ||||||| |||| ||  |||||||||||||  ||||||||||||||| |||||||    |||||||||| |||||||||||||||     
T  35457110 cagaaaaggaattgaggagcctccaggaagtttagactgaatat--cctcaaacatcttctccactctatataaccattggtgtggctcgtctaaactaa 35457013  T
Q  109 ggattttagacgagctgcacctat 132  Q
    ||||||||||||| || |||||||    
T  35457012 ggattttagacgatctccacctat 35456989  T

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