View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_low_3 (Length: 394)
Name: NF20294_low_3
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 4 - 381
Target Start/End: Complemental strand, 10037953 - 10037576
Alignment:
| Q |
4 |
tgaactgcgcagtatattatcttctttgttattgtagtcccattcttcaccatggaatgcaactgtaagttggaaggttaaacaatattaacatatttcc |
103 |
Q |
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| T |
10037953 |
tgaactgcgcagtatattatcttctttgttattgtagtcccattcttcaccatggaatgcaactgtaagtttgaaggttaaacaatattaacatatttcc |
10037854 |
T |
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| Q |
104 |
caagctcttgtaatcctcacatgaataaattcaaatacataaaaattatttattctggatgaaccgcaaaggatgcaccagtcctccgaaagaaagagag |
203 |
Q |
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| T |
10037853 |
caagctcttgtaatcctcacatgaataaattcaaatacataaaaattatttattctggatgaaccgcaaaggatgcaccagtcctctgaaagaaagagag |
10037754 |
T |
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| Q |
204 |
gagactaggaaggnnnnnnnnnnnnnnnnngcaaatgtttcttatcaacctaatcaacttaaaagaaacttacttccatggtatacccagctcttgatgc |
303 |
Q |
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| T |
10037753 |
gagactaggaaggaaaaaatcaataaaaaagcaaatgtttcttatcaacctaatcaacttaaaagaaacttacttccatggtatacccagctcttgatgc |
10037654 |
T |
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| Q |
304 |
gcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacacaggt |
381 |
Q |
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| T |
10037653 |
gcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacacaggt |
10037576 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 48482863 - 48482945
Alignment:
| Q |
296 |
cttgatgcgcacattacatgaaaatgagtagaacacttgcaacaacttgtacaagaaccatggctttgtttacaaattacaca |
378 |
Q |
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| T |
48482863 |
cttgatgcacacatcacgtgaaaatatgtagcacacttgcaacaacttgtacaggaaccatgactttgtttacagatcacaca |
48482945 |
T |
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