View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_low_4 (Length: 392)
Name: NF20294_low_4
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 54427283 - 54426919
Alignment:
| Q |
10 |
aataatatcatggaagttgaaaactctgatcatgtagaaatgaataaaaaagatgaacacaaagagatcatttcaaaagatcatcacaatcaaatagacc |
109 |
Q |
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| T |
54427283 |
aataatatcatggaagttgaaaactctgatcatgtagaaatgaataaaaaagatgaacacaaagagatcatttcaaaggatcatcacaatcaaatagacc |
54427184 |
T |
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| Q |
110 |
ctgaattgaacgtgtttttcgttccaaaggatttaaaagttggaaaaataatgccaatttatttttccaagaaagattcatcaacagctccaaaattcct |
209 |
Q |
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| T |
54427183 |
ctgaattgaacgtgtttttcgttccaaaggatttaaaagttggaaaaataatgccaatttatttttccaagaaagattcatcaacagctccaaaattcct |
54427084 |
T |
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| Q |
210 |
accaaaagaagaagctaacaaaattcctttcacaccnnnnnnnctacctttccttctagatttcttctccatctcaaaaaactctccacaagccaaagcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54427083 |
accaaaagaagaagctaacaaaattcctttcacaccaaaaaaactacctttccttctagatttcttctccatctcaaaaaactctccacaagccaaagcc |
54426984 |
T |
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| Q |
310 |
atgaaatacacacttgaacagtgtaattttgaacctatggaaggagagacaaaattctgtgctac |
374 |
Q |
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| T |
54426983 |
atgaaatacacacttgaacagtgcaattttgaacctatggaaggagagacaaaattctgtgctac |
54426919 |
T |
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