View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20294_low_5 (Length: 377)
Name: NF20294_low_5
Description: NF20294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20294_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 43802082 - 43802428
Alignment:
| Q |
16 |
tgtgcaaagtgaagggcagaagcataaggatttcgtagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgtt |
115 |
Q |
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| T |
43802082 |
tgtgcaaagcgaagggcagaagcataaggacttcgtagacattctactctcactgatgcaccaaccgatcgatccctctgacgaaaaaacccatgtcgtt |
43802181 |
T |
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| Q |
116 |
gatcgaacaaacataaaggctatatccctagacacgattgccggggcatttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggc |
215 |
Q |
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| T |
43802182 |
gatcgaacaaacataaaggctatatccctagacatgattgccggggcatttgaaacttccgcaacggttgtggagtgggctttatcagagctcatgaggc |
43802281 |
T |
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| Q |
216 |
atccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttgga |
315 |
Q |
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| T |
43802282 |
atccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaacaaattagtagaagaaaatgatttgtcaaagttaagttacttgga |
43802381 |
T |
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| Q |
316 |
tattgtgatcatggagaccttaggattataccctccgggaccacttg |
362 |
Q |
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| T |
43802382 |
tattgtgatcatggagaccttaagattataccctccgggaccacttg |
43802428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 43812651 - 43812997
Alignment:
| Q |
16 |
tgtgcaaagtgaagggcagaagcataaggatttcgtagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgtt |
115 |
Q |
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| T |
43812651 |
tgtgcaaaatgaagggcagaaacacaaaaacttcatagacattctactctcactgacgcaccagacgattgatccctctgacgaacaaagccatgtcatt |
43812750 |
T |
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| Q |
116 |
gatcgaacaaacataaaggctatatccctagacacgattgccggggcatttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggc |
215 |
Q |
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|||||||||||||||||||||||| || |||||| ||| |||| ||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||| |
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| T |
43812751 |
gatcgaacaaacataaaggctatagccttagacatgatcgccgcggcatttgacacttctgcaaccattgtggagtgggctttatccgagctcatgaggc |
43812850 |
T |
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| Q |
216 |
atccaagagtgatgaaaaatctccaacaagagctagataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttgga |
315 |
Q |
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| T |
43812851 |
atccaagagtaatgaaaaatctccaacaagagctggatagtgtagttgggatgaacaaattagtggaggagaatgatatggcaaagttaagttacttaga |
43812950 |
T |
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| Q |
316 |
tattgtgatcatggagaccttaggattataccctccgggaccacttg |
362 |
Q |
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| T |
43812951 |
tattgtgatcatggagaccttaagattatatcctgcaggaccacttg |
43812997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
188 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
237 |
Q |
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| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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