View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20295_high_11 (Length: 201)

Name: NF20295_high_11

Description: NF20295

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF20295_high_11

[»] chr8 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 18 - 188

Target Start/End: Complemental strand, 35073629 - 35073459

Alignment:

Q	18	catgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaa	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35073629	catgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaa	35073530	T

Q	118	gctttgtatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataat	188	Q
		\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35073529	gttttttatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataat	35073459	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 124 - 186

Target Start/End: Original strand, 38160024 - 38160086

Alignment:

Q	124	tatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaata	186	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|
T	38160024	tatacctgcatactcaggtgccaaatatccaaatgttccagccaaccttgtctcgacggaata	38160086	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]