View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20295_high_4 (Length: 428)

Name: NF20295_high_4
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20295_high_4
NF20295_high_4
[»] chr4 (8 HSPs)
chr4 (19-245)||(41943174-41943401)
chr4 (264-413)||(26764198-26764347)
chr4 (271-399)||(32138743-32138880)
chr4 (19-168)||(10344809-10344962)
chr4 (191-245)||(10344965-10345020)
chr4 (271-315)||(6056998-6057042)
chr4 (271-313)||(47764102-47764144)
chr4 (269-310)||(47157383-47157424)
[»] chr8 (7 HSPs)
chr8 (37-245)||(42077624-42077832)
chr8 (271-326)||(4402275-4402330)
chr8 (271-315)||(31713867-31713911)
chr8 (271-313)||(9277201-9277243)
chr8 (272-310)||(12644061-12644099)
chr8 (271-325)||(31713401-31713455)
chr8 (263-315)||(9929197-9929249)
[»] chr3 (6 HSPs)
chr3 (19-245)||(15990335-15990566)
chr3 (275-374)||(20776018-20776126)
chr3 (269-315)||(18745369-18745415)
chr3 (271-313)||(4706957-4706999)
chr3 (271-317)||(15287572-15287618)
chr3 (271-315)||(54308458-54308502)
[»] chr1 (5 HSPs)
chr1 (269-397)||(19763432-19763569)
chr1 (271-313)||(24847788-24847830)
chr1 (271-313)||(24848427-24848469)
chr1 (271-313)||(26240872-26240914)
chr1 (271-307)||(2260858-2260894)
[»] chr7 (7 HSPs)
chr7 (269-396)||(48135900-48136036)
chr7 (269-323)||(30581257-30581311)
chr7 (271-362)||(18568971-18569062)
chr7 (271-362)||(18652896-18652987)
chr7 (269-315)||(37783480-37783526)
chr7 (269-315)||(42818552-42818598)
chr7 (270-315)||(36611555-36611600)
[»] chr2 (4 HSPs)
chr2 (264-323)||(20606912-20606971)
chr2 (271-326)||(9157020-9157075)
chr2 (271-325)||(4879061-4879115)
chr2 (262-314)||(10173932-10173984)
[»] chr5 (5 HSPs)
chr5 (263-315)||(39466882-39466934)
chr5 (271-378)||(7489064-7489171)
chr5 (271-313)||(24565578-24565620)
chr5 (271-313)||(24606614-24606656)
chr5 (271-327)||(39937893-39937949)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 41943174 - 41943401
Alignment:
Q  19 agatgctctccttcctagccgaataacctctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccacaaaaacatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  41943174 agatgctctccttcctagccgaataacctctaaatttatacgcatcattcttcgctccgcaaactcaaatccaatcgaccaggaaaaccacaaaaacatg 41943273  T
Q  119 cttctcaaatgtgttgaaggctataaagcggtggatgtagttatcggcatctgaaatcttaggtgaccattagagggatagagaattgagagggtttatt 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41943274 cttctcaaatgtgttgaaggctataaaggggtggatgtagttatcggcatatgaaatcttaggtgaccattagagggatagagaattgagagggtttatt 41943373  T
Q  219 tttc-ttgcttctaaaagtgatagatgg 245  Q
     ||| || ||||||||||||||| ||||    
T  41943374 attcttttcttctaaaagtgatacatgg 41943401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 264 - 413
Target Start/End: Complemental strand, 26764347 - 26764198
Alignment:
Q  264 taggggaattctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatcagattaatcaagtccacatattctattatacacta 363  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||    
T  26764347 taggtgaattctaaggtgagggttctatcaaatccctcaccggtggaccactataaacaacaattagattaatcaagttaacatatcctattatacacta 26764248  T
Q  364 catacactagattacccctctatatatttaccatctcgcctcttatgtcc 413  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  26764247 catacactagattacccctctatatatttactatctcgtctcttatgtcc 26764198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 399
Target Start/End: Complemental strand, 32138880 - 32138743
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatca---------gattaatcaagtccacatattctattatacac 361  Q
    |||||| |||||||| |||||||| || |||||||||||||||||||| |||||||| |         |||||||||||| ||||||| ||||| |||||    
T  32138880 attctaaggtgagggctctatcaaatcactcaccggtggaccactatagacaacaattaagaccattagattaatcaagttcacatatcctattctacac 32138781  T
Q  362 tacatacactagattacccctctatatatttaccatct 399  Q
    || ||| |||||||||||||||||||||||||||||||    
T  32138780 tatatatactagattacccctctatatatttaccatct 32138743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 10344809 - 10344962
Alignment:
Q  19 agatgctctccttcctagccgaataacctctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccacaa--aaaca 116  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||| |||| |||| || ||| ||| |||||||||||| ||  |||||||  |||||    
T  10344809 agatgctctccttcctaatcgaataacctttaaatttatacgcatcactcttcgctctgctaactcaactccaatcgaccaagacgaccacaagaaaaca 10344908  T
Q  117 tgcttct--caaatgtgttgaaggctataaagcggtggatgtagttatcggcat 168  Q
    ||||| |  |  ||| ||||||||||||||   ||||||| |||||||||||||    
T  10344909 tgcttttatcccatgcgttgaaggctataagagggtggatatagttatcggcat 10344962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 10344965 - 10345020
Alignment:
Q  191 gagggatagagaattgagagggtttatttttc-ttgcttctaaaagtgatagatgg 245  Q
    |||||||||||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  10344965 gagggatagagaattgagagggtttattattcttttcttctaaaagtgatacatgg 10345020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 6057042 - 6056998
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    ||||||||||||||||||||  || ||||||||||||||||||||    
T  6057042 attctagggtgagggttctactaagtccctcaccggtggaccact 6056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 47764144 - 47764102
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||    
T  47764144 attctagggtaagggttcaatcaaatccctcaccggtggacca 47764102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 47157424 - 47157383
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtgga 310  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  47157424 gaattctagggtgagggttcaattaaatccctcaccggtgga 47157383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 42077624 - 42077832
Alignment:
Q  37 ccgaataacctctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccacaaaaacatgcttctcaaatgtgttgaa 136  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  42077624 ccgaataacctctaaatttatacgcatcattcttcactccgcaaactcaaattcaatcgaccaggaaaaccacaaaaacat-cttctcaaatgtgttgaa 42077722  T
Q  137 ggctataaagcggtggatgtagttatcggcatctgaaatcttaggtgaccattagagggatagagaattgagagggtttatttttc-ttgcttctaaaag 235  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  42077723 ggctataaagcggtggatgtagttatcgacatatgaaatcttaggtgaccattagagggatagagaattgagagggtttattattcttttcttctaaaag 42077822  T
Q  236 tgatagatgg 245  Q
    ||||| ||||    
T  42077823 tgatacatgg 42077832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 4402330 - 4402275
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaa 326  Q
    ||||||||||||||||||||| || ||||||||||||| |||||| | ||||||||    
T  4402330 attctagggtgagggttctattaagtccctcaccggtgaaccactttgaacaacaa 4402275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 31713911 - 31713867
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  31713911 attctagggtgagggttctaacaagtccctcacccgtggaccact 31713867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 9277201 - 9277243
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||    
T  9277201 attctagggtgagggttctaacaagtccctcatcggtggacca 9277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 12644099 - 12644061
Alignment:
Q  272 ttctagggtgagggttctatcaattccctcaccggtgga 310  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  12644099 ttctagggtgagggttctatcaagtccctcatcggtgga 12644061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 31713401 - 31713455
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaaca 325  Q
    |||||||||||| ||||||| ||| ||||||| |||||||||| |||||| ||||    
T  31713401 attctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaaca 31713455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 9929197 - 9929249
Alignment:
Q  263 ttaggggaattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    ||||| |||||||| |||||||| ||||  || ||||||||||||||||||||    
T  9929197 ttaggtgaattctaaggtgagggctctactaagtccctcaccggtggaccact 9929249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 15990335 - 15990566
Alignment:
Q  19 agatgctctccttcctagccgaataacctctaaatttatacgcatcattctttgctccgcaaacccaaatccaatcgaccaggaaaaccacaa--aaaca 116  Q
    |||||||||||||| ||| |||||||||| ||||| ||||||||||| |||| |||| || ||| ||| || ||||||||||||  | |||||  |||||    
T  15990335 agatgctctccttcttagtcgaataacctttaaatctatacgcatcactcttcgctctgctaactcaactcgaatcgaccaggacgatcacaagaaaaca 15990434  T
Q  117 tgcttct--caaatgtgttgaaggctataa-agcggtggatgtagttatcggcatctgaaatcttaggtgaccattagagggatagagaattgagagggt 213  Q
    ||||| |  |  ||| ||| |||||||||| |||| ||||| || |||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  15990435 tgcttttatcccatgcgttcaaggctataagagcg-tggatatatttatcgacatatgaaatcttatgtgaccattagagggatagagaattgagagggt 15990533  T
Q  214 ttatttttc-ttgcttctaaaagtgatagatgg 245  Q
    | ||| ||| || ||||||||||||||| ||||    
T  15990534 taattattcttttcttctaaaagtgatacatgg 15990566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 374
Target Start/End: Original strand, 20776018 - 20776126
Alignment:
Q  275 tagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatca---------gattaatcaagtccacatattctattatacactaca 365  Q
    |||| |||||| |||||||| |||||||||||  ||||||||||||||||||| |         |||||||||||||||||||||||||| |||||||||    
T  20776018 taggatgagggctctatcaaatccctcaccggcagaccactataaacaacaattaagatcattagattaatcaagtccacatattctattctacactaca 20776117  T
Q  366 tacactaga 374  Q
    || ||||||    
T  20776118 tatactaga 20776126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 18745415 - 18745369
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  18745415 gaattctagggtgagggttcaatcaagtccctcaccggtgcaccact 18745369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 4706999 - 4706957
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  4706999 attctagggtgagggttctattaagtccctcaccggtgtacca 4706957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 15287572 - 15287618
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactat 317  Q
    |||||||||||||||| | || || ||||||||||||||||||||||    
T  15287572 attctagggtgagggtccaattaagtccctcaccggtggaccactat 15287618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 54308458 - 54308502
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    |||||||||||||||||| || || ||||||||||||| ||||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtgaaccact 54308502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 397
Target Start/End: Original strand, 19763432 - 19763569
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatcag---------attaatcaagtccacatattctattatac 359  Q
    |||||||||||| | || |||||||| |||||||| |||||| |||||||||||||||| |          |||||||||||||||||||  |||| |||    
T  19763432 gaattctagggtaaaggctctatcaaatccctcactggtggatcactataaacaacaattaagaccattaaattaatcaagtccacatatcatattctac 19763531  T
Q  360 actacatacactagattacccctctatatatttaccat 397  Q
    |||||||| ||||||||| | |||||||||||||||||    
T  19763532 actacatatactagattatcgctctatatatttaccat 19763569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 24847788 - 24847830
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  24847788 attctagggtgagggttctattaagtccctcaccggtgtacca 24847830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 24848469 - 24848427
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    ||||||||||||||||||||| || ||||||||||||| ||||    
T  24848469 attctagggtgagggttctattaagtccctcaccggtgtacca 24848427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 26240914 - 26240872
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  26240914 attctagggtgagggttcaattaagtccctcaccggtggacca 26240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 2260858 - 2260894
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggt 307  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  2260858 attctagggtgagggttcaatcaagtccctcaccggt 2260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 269 - 396
Target Start/End: Original strand, 48135900 - 48136036
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatca---------gattaatcaagtccacatattctattatac 359  Q
    |||||||| ||||| || |||||||| |||||||||| || | |||||||||||||||| |         |||||||||||||||||||| ||||| |||    
T  48135900 gaattctaaggtgatggctctatcaaatccctcaccgatgcatcactataaacaacaattaagatcattagattaatcaagtccacatatcctattctac 48135999  T
Q  360 actacatacactagattacccctctatatatttacca 396  Q
    | |||||| | ||||||| ||||||||||||||||||    
T  48136000 attacatatattagattatccctctatatatttacca 48136036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 30581311 - 30581257
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccactataaacaa 323  Q
    |||||||||||||||||||| || || ||||||||| ||| ||||||||||||||    
T  30581311 gaattctagggtgagggttcaattaagtccctcaccagtgaaccactataaacaa 30581257  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 18569062 - 18568971
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatcagattaatcaagtccacatattctattatacact 362  Q
    |||||||||||| ||| |||| || |||||||||||||||||| |||  | ||| || ||||||||||| | |||| ||  |||||||||||    
T  18569062 attctagggtgaaggtcctattaaatccctcaccggtggaccattatttaaaaccattagattaatcaaattcacacatcttattatacact 18568971  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 18652896 - 18652987
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatcagattaatcaagtccacatattctattatacact 362  Q
    |||||||||||| ||| |||| || |||||||||||||||||| |||  | ||| || ||||||||||| | |||| ||  |||||||||||    
T  18652896 attctagggtgaaggtcctattaaatccctcaccggtggaccattatttaaaaccattagattaatcaaattcacacatcttattatacact 18652987  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 37783526 - 37783480
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    ||||||||||||||||| ||||  || ||||||||||||||||||||    
T  37783526 gaattctagggtgagggctctactaagtccctcaccggtggaccact 37783480  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 42818598 - 42818552
Alignment:
Q  269 gaattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    |||||||||||||||||||| || || ||||||||||||||| ||||    
T  42818598 gaattctagggtgagggttcaattaagtccctcaccggtggatcact 42818552  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 36611555 - 36611600
Alignment:
Q  270 aattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    ||||||||||||||||||| || || ||||||||||||| ||||||    
T  36611555 aattctagggtgagggttcaattaagtccctcaccggtgaaccact 36611600  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 20606971 - 20606912
Alignment:
Q  264 taggggaattctagggtgagggttctatcaattccctcaccggtggaccactataaacaa 323  Q
    |||| |||||||||||||||||||| || || ||||||||||||| ||||||||||||||    
T  20606971 taggtgaattctagggtgagggttcaattaagtccctcaccggtgaaccactataaacaa 20606912  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 9157020 - 9157075
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaa 326  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||| | ||||||||    
T  9157020 attctagggcgagggttctattaaatccctcaccggtgaaccactttgaacaacaa 9157075  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 325
Target Start/End: Original strand, 4879061 - 4879115
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaaca 325  Q
    |||||||||||| ||||||| ||| ||||||| |||||||||| |||||| ||||    
T  4879061 attctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaaca 4879115  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 10173932 - 10173984
Alignment:
Q  262 tttaggggaattctagggtgagggttctatcaattccctcaccggtggaccac 314  Q
    |||||| | ||||||||||||||||||| | || ||||||||||||| |||||    
T  10173932 tttaggtggattctagggtgagggttctgttaagtccctcaccggtgaaccac 10173984  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 39466882 - 39466934
Alignment:
Q  263 ttaggggaattctagggtgagggttctatcaattccctcaccggtggaccact 315  Q
    ||||| |||||||||||||||||| | || || ||||||||||||||||||||    
T  39466882 ttaggtgaattctagggtgagggtccaattaagtccctcaccggtggaccact 39466934  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 378
Target Start/End: Complemental strand, 7489171 - 7489064
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaatcagattaatcaagtccacatattctattatacactacatacac 370  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||| ||| || | ||||  |||||||||| |||| | ||  |||| ||||||   |||||    
T  7489171 attctaaggtgagggtcctatcaagtccctcactggtggaccattattaagagcaattggattaatcaaatccatacatcttattgtacactttctacac 7489072  T
Q  371 tagattac 378  Q
    ||||||||    
T  7489071 tagattac 7489064  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 24565578 - 24565620
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  24565578 attctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 24606614 - 24606656
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggacca 313  Q
    |||||||||||||||||| || || ||||||||||||||||||    
T  24606614 attctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 39937949 - 39937893
Alignment:
Q  271 attctagggtgagggttctatcaattccctcaccggtggaccactataaacaacaat 327  Q
    ||||||||||||||||||  | || ||||||||||||||||||| || || ||||||    
T  39937949 attctagggtgagggttcagttaagtccctcaccggtggaccaccatgaataacaat 39937893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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