View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20295_high_5 (Length: 406)

Name: NF20295_high_5
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20295_high_5
NF20295_high_5
[»] chr1 (9 HSPs)
chr1 (1-387)||(5919374-5919760)
chr1 (40-281)||(5920964-5921205)
chr1 (198-386)||(5919289-5919477)
chr1 (143-385)||(5919798-5920040)
chr1 (93-386)||(5920876-5921169)
chr1 (43-295)||(5920121-5920373)
chr1 (196-332)||(5920697-5920833)
chr1 (42-383)||(5919838-5920179)
chr1 (38-122)||(5921103-5921187)
[»] chr6 (14 HSPs)
chr6 (200-353)||(28488617-28488770)
chr6 (200-353)||(29801029-29801182)
chr6 (184-353)||(29470820-29470989)
chr6 (38-108)||(29672178-29672248)
chr6 (38-282)||(29470609-29470853)
chr6 (197-289)||(29720731-29720823)
chr6 (197-289)||(29720872-29720964)
chr6 (307-353)||(29690670-29690716)
chr6 (321-386)||(28489022-28489087)
chr6 (197-278)||(29719885-29719966)
chr6 (46-87)||(29720016-29720057)
chr6 (321-386)||(29801432-29801497)
chr6 (46-82)||(29719734-29719770)
chr6 (46-82)||(29720298-29720334)
[»] chr3 (4 HSPs)
chr3 (184-386)||(617560-617762)
chr3 (198-272)||(617110-617184)
chr3 (198-353)||(617734-617889)
chr3 (38-122)||(616696-616780)
[»] scaffold0012 (2 HSPs)
scaffold0012 (46-289)||(200067-200310)
scaffold0012 (247-363)||(236946-237062)


Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 5919374 - 5919760
Alignment:
Q  1 cggcaatatctaacactgaggactttgagattatttggaaacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  5919374 cggcaatatctaacactgaggactttgagattatttggaaaccgatccaccacaagtggaaaacactcaagattatgacaatatgaaagattgagttctt 5919473  T
Q  101 ctagcaaagccaaattgagaggcaggatactcctaatattgctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtgg 200  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5919474 ctagcgaagccaaattgagaggcgggatactcctaatattgctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaataggtgg 5919573  T
Q  201 aaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919574 aaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacatta 5919673  T
Q  301 aggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctagg 387  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5919674 aggaccttaagtttacccagcaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctagg 5919760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 40 - 281
Target Start/End: Original strand, 5920964 - 5921205
Alignment:
Q  40 aacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagaggcaggatactcctaatat 139  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||  || |||| |||||||| ||  ||||||  || |||||  | ||||||||||||     
T  5920964 aacccatccaccacaagtggaaaacactcgagactatcacaatataaaagattaagttcttcaagtgaagccatcttaagaggtggaatactcctaatag 5921063  T
Q  140 tgctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttg 239  Q
    || |||||||| |||| |||||| ||| |||||| || ||    ||||| || | | |||||||||||| ||||||||||  ||| |||||||||||||     
T  5921064 tgttgcaatttttaacactcaaggtttgaagtttattaagaaacccatctaccacatgtggaaaactctcgagactatcaatatatgaaagatcgagttc 5921163  T
Q  240 ttccagcgaatctaatttgagaggtggaatactcttgagctt 281  Q
    ||| |||||| | || ||||||||||||| ||||||||||||    
T  5921164 ttctagcgaaaccaacttgagaggtggaagactcttgagctt 5921205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 198 - 386
Target Start/End: Original strand, 5919289 - 5919477
Alignment:
Q  198 tggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaaca 297  Q
    |||||||||||  ||  |||||||||| |||||||| ||   ||| |||||| | || ||||||||||||||||||||||||||| ||||||||||||||    
T  5919289 tggaaaactctcaaggttatcacaatatgaaagatcaagaacttctagcgaagcaaacttgagaggtggaatactcttgagcttgcggcaatatctaaca 5919388  T
Q  298 ttaaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctag 386  Q
     | ||||| || || |||    |||||| ||| |||||| ||||||||| ||| ||   || |||||||| |||||| |||||||||||    
T  5919389 ctgaggactttgagattatttggaaaccgatccaccacaagtggaaaacactcaagattatgacaatatgaaagattgagttcttctag 5919477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 143 - 385
Target Start/End: Original strand, 5919798 - 5920040
Alignment:
Q  143 tgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttc 242  Q
    ||||| || ||||||| |||||| |||||||||  |||   |||||||| | |||||||||||||   |||||||||||||| |||||||| |  |||||    
T  5919798 tgcaacttataactctgaagattctaagtttctctagcatcccatccaccacaggtggaaaactcacaagactatcacaatatgaaagatcaaaatgttc 5919897  T
Q  243 cagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacattaaggaccttaagtttacccagaaacccatctaccacatgtgga 342  Q
    |||  || | || |||||||||||||| ||| ||||||||  ||||||| ||| | | | ||  | ||||||| ||| ||| ||||| |||| | | |||    
T  5919898 cagtaaagccaacttgagaggtggaatgctcctgagcttgctgcaatatataatactcaagaattgaagtttatccataaatccatccaccaaaagagga 5919997  T
Q  343 aaactctcgaggccatcacaatatgtaagattaagttcttcta 385  Q
    |||||||||||   ||||||||||| ||||| |||| ||||||    
T  5919998 aaactctcgagattatcacaatatgaaagatcaagtacttcta 5920040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 386
Target Start/End: Original strand, 5920876 - 5921169
Alignment:
Q  93 gagttcttctagcaaagccaaattgagaggcaggatactcctaatattgctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccaca 192  Q
    ||||||||||||  ||| ||| |||| |||  |||||||  | ||||| ||||||  | |||||||||||||||||||||||| |||    ||||||||     
T  5920876 gagttcttctagtgaagtcaacttgaaaggtgggatacttttgatattactgcaacctataactctcaagattttaagtttctccagtaacccatccacc 5920975  T
Q  193 aaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatc 292  Q
    | | ||||||||| || |||||||||||||||  ||||||  |||| ||| || ||| | |  || ||||||||||||||| | |   ||| ||||| |     
T  5920976 acaagtggaaaacactcgagactatcacaatataaaagattaagttcttcaagtgaagccatcttaagaggtggaatactcctaatagtgttgcaatttt 5921075  T
Q  293 taacattaaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctag 386  Q
    ||||| | | |   | |||||||   ||||||||||||||||||||||||||||||||||| | ||||  ||||| |||||  |||||||||||    
T  5921076 taacactcaaggtttgaagtttattaagaaacccatctaccacatgtggaaaactctcgagactatcaatatatgaaagatcgagttcttctag 5921169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 43 - 295
Target Start/End: Original strand, 5920121 - 5920373
Alignment:
Q  43 ccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagaggcaggatactcctaatattgc 142  Q
    |||||||||||   |||||||| ||| ||| ||| |||||| ||| |||  |||||||| ||  ||||||| || |||||  |||||||| | | |||||    
T  5920121 ccatccaccactgttggaaaactctcgagactatcacaatatgaaagatcaagttcttccagtgaagccaactttagaggtgggatactcttgagattgc 5920220  T
Q  143 tgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttc 242  Q
    | ||| || |||||||||  ||||||||||||| || |   |||||||| | | | |||||||| |  ||||||||||| || |||| ||||||  ||||    
T  5920221 tacaacttttaactctcataattttaagtttctccaacatcccatccaccacatggggaaaactatcaagactatcacagtatgaaatatcgagaagttc 5920320  T
Q  243 cagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaa 295  Q
    ||| ||||| || || |||||||||||  || ||||||||||||| |||||||    
T  5920321 cagagaatccaacttcagaggtggaatgatcctgagcttgtggcagtatctaa 5920373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 196 - 332
Target Start/End: Original strand, 5920697 - 5920833
Alignment:
Q  196 ggtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaa 295  Q
    |||||||||||||  || ||||  ||||| |||||||||||||||||||  | | | || ||||||||||||||| |||||||||||   ||||||||||    
T  5920697 ggtggaaaactctcaaggctattgcaatatgaaagatcgagttgttccaaagcacccaacttgagaggtggaatattcttgagcttgcaacaatatctaa 5920796  T
Q  296 cattaaggaccttaagtttacccagaaacccatctac 332  Q
    || | ||||  ||||||||| | ||||||||||||||    
T  5920797 cacttaggagtttaagtttatcaagaaacccatctac 5920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 42 - 383
Target Start/End: Original strand, 5919838 - 5920179
Alignment:
Q  42 cccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagaggcaggatactcctaatattg 141  Q
    ||||||||||||| ||||||||| | ||||| ||| |||||| ||| |||  |  | ||| || |||||||| ||||||||  | || ||||| |  |||    
T  5919838 cccatccaccacaggtggaaaactcacaagactatcacaatatgaaagatcaaaatgttccagtaaagccaacttgagaggtggaatgctcctgagcttg 5919937  T
Q  142 ctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgtt 241  Q
    ||||||| | |||  ||||||| || |||||| | ||    ||||||||| ||| | |||||||||| |||| |||||||||| |||||||| |||  ||    
T  5919938 ctgcaatatataatactcaagaattgaagtttatccataaatccatccaccaaaagaggaaaactctcgagattatcacaatatgaaagatcaagtactt 5920037  T
Q  242 ccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacattaaggaccttaagtttacccagaaacccatctaccacatgtgg 341  Q
    | |  ||| | || ||||||||||||| ||| ||||| |||| ||||  | | ||  | |  ||  |||||||||||| ||| ||||| |||||   |||    
T  5920038 ctaaagaagccaacttgagaggtggaaaacttttgagtttgttgcaacctttgacgctcaatactctaagtttacccaaaaatccatccaccactgttgg 5920137  T
Q  342 aaaactctcgaggccatcacaatatgtaagattaagttcttc 383  Q
    |||||||||||| | ||||||||||| ||||| |||||||||    
T  5920138 aaaactctcgagactatcacaatatgaaagatcaagttcttc 5920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 5921103 - 5921187
Alignment:
Q  38 gaaacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagagg 122  Q
    |||||||||| |||||| ||||||||| ||| ||| ||| |  ||| ||| ||| ||||||||||||| || |||| ||||||||    
T  5921103 gaaacccatctaccacatgtggaaaactctcgagactatcaatatatgaaagatcgagttcttctagcgaaaccaacttgagagg 5921187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 28488617 - 28488770
Alignment:
Q  200 gaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacatt 299  Q
    ||||||||| |||||||  |||||| ||||| || |||| ||| || ||||| || |||||||||||||||||| |||| ||||| |||  || ||||      
T  28488617 gaaaactctcgagactacaacaatatgaaaggtcaagtttttctagtgaatccaacttgagaggtggaatactcctgagtttgtgacaacttccaacaag 28488716  T
Q  300 aaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgag 353  Q
    ||||   |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  28488717 aagggttttaagttttccaagaaacccgtctaccacaagtggaaaactctcgag 28488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 353
Target Start/End: Original strand, 29801029 - 29801182
Alignment:
Q  200 gaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaacatt 299  Q
    ||||||||| |||||||  |||||| ||||| || |||| ||| || ||||| || |||||||||||||||||| |||| ||||| |||  || ||||      
T  29801029 gaaaactctcgagactacaacaatatgaaaggtcaagtttttctagtgaatccaacttgagaggtggaatactcctgagtttgtgacaacttccaacaag 29801128  T
Q  300 aaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgag 353  Q
    ||||   |||||||| || |||||||| ||||||||| ||||||||||||||||    
T  29801129 aagggttttaagttttccaagaaacccgtctaccacaagtggaaaactctcgag 29801182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 353
Target Start/End: Complemental strand, 29470989 - 29470820
Alignment:
Q  184 ccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgt 283  Q
    |||||||| | || ||||||||||| |||||||| |||||  ||||| || || | ||| |  ||||| ||  ||||||||||||||||| |||| |||     
T  29470989 ccatccaccacagttggaaaactctcgagactataacaatgtgaaaggtcaagcttttctaatgaatccaacctgagaggtggaatactcctgagattgc 29470890  T
Q  284 ggcaatatctaacattaaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgag 353  Q
    | |||||| |||||   ||||  |||||||| || ||||||||||| |||||| ||||||||||||||||    
T  29470889 gacaatatttaacaagtaggattttaagttttccaagaaacccatccaccacaagtggaaaactctcgag 29470820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 29672178 - 29672248
Alignment:
Q  38 gaaacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaa 108  Q
    ||||||||||||| ||||||||||||  ||| |||||| ||||||||||| |||  || ||||||||||||    
T  29672178 gaaacccatccactacaagtggaaaattctcgagattaagacaatacgaaagatctagctcttctagcaaa 29672248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 29470853 - 29470609
Alignment:
Q  38 gaaacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagaggcaggatactcctaat 137  Q
    ||||||||||||||||||||||||||| ||| ||| ||  |||||  ||| ||| ||||||||||| | ||| ||| || ||||   | |||||||| |     
T  29470853 gaaacccatccaccacaagtggaaaactctcgagactaaaacaatttgaaagatcgagttcttctaacgaagtcaacttaagagttggaatactccttaa 29470754  T
Q  138 attgctgcaatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagt 237  Q
     |||  |||| || ||||  ||| | |||||||||| | || |   ||||| || | ||||||||||||||  |||| |  ||| |  ||||||||||||    
T  29470753 cttgacgcaacttctaacagtcatggttttaagtttatccaccaacccatctaccacaggtggaaaactctcaagacaagaacactgtgaaagatcgagt 29470654  T
Q  238 tgttccagcgaatctaatttgagaggtggaatactcttgagcttg 282  Q
    | |||||| ||| | || |||||||| ||||||||| ||||||||    
T  29470653 tcttccagagaagccaacttgagaggcggaatactcctgagcttg 29470609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 29720731 - 29720823
Alignment:
Q  197 gtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaat 289  Q
    ||||||||||||  ||| |||||||| | ||||| || |||  ||| || ||||| || ||||||||||||||||||||||| ||||| ||||    
T  29720731 gtggaaaactctcaagagtatcacaacatgaaagttctagtgtttctagtgaatccaacttgagaggtggaatactcttgagattgtgacaat 29720823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 29720872 - 29720964
Alignment:
Q  197 gtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaat 289  Q
    ||||||||||||  ||||||| |||||  ||||| || |||  ||| || ||||| || ||||||||||||||||||||||| ||||| ||||    
T  29720872 gtggaaaactctcaagactatgacaatctgaaagttctagtgtttctagtgaatccaacttgagaggtggaatactcttgagattgtgacaat 29720964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 29690670 - 29690716
Alignment:
Q  307 ttaagtttacccagaaacccatctaccacatgtggaaaactctcgag 353  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||||    
T  29690670 ttaagttttccaagaaacccatccaccacatttggaaaactctcgag 29690716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 28489022 - 28489087
Alignment:
Q  321 aaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctag 386  Q
    |||||||||||||| | ||||||||||||| || |||  ||||| || ||||| ||||||||||||    
T  28489022 aaacccatctaccaaaggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctag 28489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 29719885 - 29719966
Alignment:
Q  197 gtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgag 278  Q
    ||||||||||||  ||| |||||||| | ||||| || |||  ||| || ||||| || |||||||||||||||||||||||    
T  29719885 gtggaaaactctcaagagtatcacaacatgaaagttctagtgtttctagtgaatccaacttgagaggtggaatactcttgag 29719966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 29720016 - 29720057
Alignment:
Q  46 tccaccacaagtggaaaacactcaagattatgacaatacgaa 87  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||    
T  29720016 tccaccacaagtggaaaactctcaagactatgacaattcgaa 29720057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 29801432 - 29801497
Alignment:
Q  321 aaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttctag 386  Q
    |||||||||||||| | ||||||||||||| || |||  ||||| || ||||| ||||||||||||    
T  29801432 aaacccatctaccaaaggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctag 29801497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 29719734 - 29719770
Alignment:
Q  46 tccaccacaagtggaaaacactcaagattatgacaat 82  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  29719734 tccaccacaagtggaaaactctcaagactatgacaat 29719770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 29720298 - 29720334
Alignment:
Q  46 tccaccacaagtggaaaacactcaagattatgacaat 82  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  29720298 tccaccacaagtggaaaactctcaagactatgacaat 29720334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 386
Target Start/End: Complemental strand, 617762 - 617560
Alignment:
Q  184 ccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgt 283  Q
    |||||||| | | |||||||||||| ||| |||| |||||  ||||| || |||| ||| || ||||| || | |||||||||||||||| |||| ||||    
T  617762 ccatccaccacaagtggaaaactctcgagcctataacaatttgaaaggtcaagtttttcaagtgaatccaactggagaggtggaatactcctgagattgt 617663  T
Q  284 ggcaatatctaacattaaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgaggccatcacaatatgtaagattaagttcttc 383  Q
    | |||  | |||||  ||||   |||||||| || |||||||| |  |||||| |||||||| ||||||| | || ||||| || ||| | |||||||||    
T  617662 gacaacttgtaacaagaagggttttaagttttccaagaaacccgtgaaccacaagtggaaaattctcgagcctataacaatttgaaaggtcaagttcttc 617563  T
Q  384 tag 386  Q
    |||    
T  617562 tag 617560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 617184 - 617110
Alignment:
Q  198 tggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatact 272  Q
    |||||||||||  |||||| ||||||||||||| || | || ||| |||||||| || |||||||||||||||||    
T  617184 tggaaaactctcaagactaccacaataagaaaggtcaaatttttctagcgaatccaacttgagaggtggaatact 617110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 353
Target Start/End: Complemental strand, 617889 - 617734
Alignment:
Q  198 tggaaaactcttgagactatcacaataagaaagatcgagttgttccagcgaatctaatttgagaggtggaatactcttgagcttgtggcaatatctaaca 297  Q
    |||||||||||  ||||||  |||| | ||||| || |||| ||| |  ||||| || ||||||||||| |||||| |||| ||||| |||  | |||||    
T  617889 tggaaaactctcaagactacaacaacatgaaaggtcaagtttttctaaagaatccaaattgagaggtgggatactcctgagattgtgacaacttgtaaca 617790  T
Q  298 ttaaggaccttaagtttacccagaaacccatctaccacatgtggaaaactctcgag 353  Q
       |||   |||||||| || ||||||||||| |||||| ||||||||||||||||    
T  617789 agtagggttttaagttttccaagaaacccatccaccacaagtggaaaactctcgag 617734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 616780 - 616696
Alignment:
Q  38 gaaacccatccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagagg 122  Q
    ||||||| |||| |||||||||||||| ||||||| ||| |||| | ||| | || |||  |||||||||| |||| ||||||||    
T  616780 gaaacccgtccatcacaagtggaaaactctcaagactataacaacatgaaaggttaagtgtttctagcaaatccaacttgagagg 616696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 200067 - 200310
Alignment:
Q  46 tccaccacaagtggaaaacactcaagattatgacaatacgaatgattgagttcttctagcaaagccaaattgagaggcaggatactcctaatattgctgc 145  Q
    |||||||||  |||||||| ||| ||| ||| |||||| |||  |||||||||||||||  ||||||||||||||    |||  ||||| |||| | |||    
T  200067 tccaccacagatggaaaactctcgagactatcacaatatgaaaaattgagttcttctagtgaagccaaattgagacatgggaggctcctgatatggatgc 200166  T
Q  146 aatttgtaactctcaagattttaagtttcttcagctgtccatccacaaaaggtggaaaactcttgagactatcacaataagaaagatcgagttgttccag 245  Q
    ||||| |||||   || || ||| |||| | || |    |||| || || ||||||||| | | ||||||||||||||| |||||||| | ||||||||     
T  200167 aatttataacttcaaatatcttatgtttgtccaacaagtcatctaccaagggtggaaaattttcgagactatcacaatatgaaagatcaaattgttccaa 200266  T
Q  246 cgaatctaatttgagaggtggaatactcttgagcttgtggcaat 289  Q
     ||| | || ||||||  ||||||| | ||||||||||| ||||    
T  200267 tgaagccaacttgagaactggaatatttttgagcttgtgacaat 200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 236946 - 237062
Alignment:
Q  247 gaatctaatttgagaggtggaatactcttgagcttgtggcaa-tatctaacattaaggaccttaagtttacccagaaacccatctaccacatgtggaaaa 345  Q
    ||||| || |||||||||||||||||| |||| | | | ||| ||| ||||||| |||   |||||||| || ||||||||||| |||||| ||||||||    
T  236946 gaatccaacttgagaggtggaatactcctgagatcgcgacaactat-taacattcagggttttaagttttccaagaaacccatccaccacaggtggaaaa 237044  T
Q  346 ctctcgaggccatcacaa 363  Q
    ||||| || | |||||||    
T  237045 ctctcaagactatcacaa 237062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University