View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20295_low_1 (Length: 572)
Name: NF20295_low_1
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20295_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 105 - 550
Target Start/End: Original strand, 38942708 - 38943149
Alignment:
| Q |
105 |
ctgttttccttttcaaaaaactttcctgaatctacttctacnnnnnnnnctcaactgaatctacacacacaggaaatggcttcatagtaaaaagaataga |
204 |
Q |
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| T |
38942708 |
ctgttttccttttcaaaaagctttcctgaatctacttgtacctaaaaaactcaactgaatctacacacagaggaaatggcttcagagtaaaaagaataga |
38942807 |
T |
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| Q |
205 |
caatcacaacaacctcaacaattcatactatcacaataatctcatctccctttagttgtacacaatcacttcccgttccaaattaccctgcaattcaatc |
304 |
Q |
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| T |
38942808 |
caatgacaacaacctcaacaattcatactaccacaataatcccacctcc-tttagttgtacacaatcacttcccattccaaattaccctgcaattcaatc |
38942906 |
T |
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| Q |
305 |
aaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcagg |
404 |
Q |
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| T |
38942907 |
aaccacccaaccacagtcatattcataactctcattcctactaaattccttcaaccaatccattaacagttgcacttacaataaaagttccatcgtcagg |
38943006 |
T |
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| Q |
405 |
tatatcagtcagctgagcaatggttttcttcgcacatacaattcgcaaatacacttcatcaaaagacgaccttacacggggaccaagtatgggaacagtc |
504 |
Q |
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| T |
38943007 |
tatatcagtcagctgagcaatggttttctttg--catacaa-tcgctaaaacacttcatcaaaagacgaacttacacggggagcaagtatgggaacagtc |
38943103 |
T |
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| Q |
505 |
ttggatgtctcaactccatcaaagcccacccagaaatatagcacac |
550 |
Q |
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| T |
38943104 |
ttggatgtctcaactccatcaaagcccacccagaaatataacacac |
38943149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 13724013 - 13723893
Alignment:
| Q |
159 |
ctgaatctacacacacaggaaatggcttcatagtaaaaagaatagacaatcacaacaacctcaacaattcatactat--cacaataatctcatctccctt |
256 |
Q |
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| T |
13724013 |
ctgaatctaaaaacacaggaaatggcttcttggaaaaaagcatacacaatgttaacaacctcaatagctcatacaattctacaataatttcatctccttt |
13723914 |
T |
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| Q |
257 |
tagttgtacacaatcacttcc |
277 |
Q |
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| T |
13723913 |
tagctcaacacaatcacttcc |
13723893 |
T |
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