View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20295_low_11 (Length: 204)

Name: NF20295_low_11
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20295_low_11
NF20295_low_11
[»] chr5 (9 HSPs)
chr5 (17-191)||(26536156-26536330)
chr5 (14-191)||(27358053-27358215)
chr5 (37-174)||(19969308-19969445)
chr5 (23-174)||(1347682-1347833)
chr5 (23-174)||(9619102-9619253)
chr5 (20-178)||(20112119-20112277)
chr5 (40-175)||(17392606-17392741)
chr5 (22-127)||(19653696-19653801)
chr5 (37-178)||(19807088-19807229)
[»] scaffold0009 (3 HSPs)
scaffold0009 (37-175)||(40799-40937)
scaffold0009 (37-173)||(21922-22058)
scaffold0009 (37-175)||(34169-34307)
[»] chr6 (1 HSPs)
chr6 (37-173)||(16258181-16258317)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 26536156 - 26536330
Alignment:
Q  17 gaaaacaaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaa 116  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26536156 gaaaacaaccaaacatgattggaaatacccagatcatgttcctgagagtgttaggtctcatcttacaacatgtagcattataaactatgaagctgcagaa 26536255  T
Q  117 gctgattttctatttgcaatatatatcttgaagaatgcaagacctttacaggatatgacaatacacattcatagt 191  Q
    || ||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||| |||||| ||||||||    
T  26536256 gcggattttcgatttgcaatatatatcttgaagaatgctagacttgtacaggatatgacgatacacgttcatagt 26536330  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 191
Target Start/End: Complemental strand, 27358215 - 27358053
Alignment:
Q  14 gatgaaaacaaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgca 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||               |||||||||||||||||    
T  27358215 gatgaaaacaaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatgtta---------------taaactatcaagctgca 27358131  T
Q  114 gaagctgattttctatttgcaatatatatcttgaagaatgcaagacctttacaggatatgacaatacacattcatagt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27358130 gaagctgattttctatttgcaatatatatcttgaagaatgcaagacttttacaggatatgacaatacacattcatagt 27358053  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 37 - 174
Target Start/End: Complemental strand, 19969445 - 19969308
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||||||||| |||||||||| || ||||||  ||||||||||||||||||||| |||| | ||||||||||||  ||||||||||||| ||||||||     
T  19969445 ggaaatacccatatcatgttcccgaatgtgttttgtctcatcttacaacatgtaatattacacactatcaagctgtggaagctgattttcgatttgcaac 19969346  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatga 174  Q
     ||||| ||| |||| || |||| |||| ||| |||||    
T  19969345 gtatattttgcagaacgctagacatttaaaggttatga 19969308  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 1347833 - 1347682
Alignment:
Q  23 aaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgat 122  Q
    ||||||||  ||| ||| ||||||| ||||||||||| | ||||||   |||||||||||||||||||| || ||| ||||||||||||  |||||||||    
T  1347833 aaccaaagcggattggatatacccatatcatgttcctcaatgtgtttcctctcatcttacaacatgtaatatcatacactatcaagctgtggaagctgat 1347734  T
Q  123 tttctatttgcaatatatatcttgaagaatgcaagacctttacaggatatga 174  Q
    || | ||||||||  ||||| ||||||||||||| ||  ||||||| |||||    
T  1347733 ttccgatttgcaacctatatattgaagaatgcaaaactgttacaggttatga 1347682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 174
Target Start/End: Original strand, 9619102 - 9619253
Alignment:
Q  23 aaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgat 122  Q
    ||||||||| ||| ||||||||||| ||||||||||||| ||||||   |||||| | ||||||||||||||| || |||||| || ||  ||| |||||    
T  9619102 aaccaaagaggattggaaatacccacatcatgttcctgaatgtgtttcatctcatttaacaacatgtaacattttacactatctagatgtggaacctgat 9619201  T
Q  123 tttctatttgcaatatatatcttgaagaatgcaagacctttacaggatatga 174  Q
    |||| ||||||||  ||||| ||  ||||||| |||| | ||||||||||||    
T  9619202 tttcgatttgcaaggtatatttttcagaatgcgagacttctacaggatatga 9619253  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 20112119 - 20112277
Alignment:
Q  20 aacaaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagct 119  Q
    |||||| |||||  || ||||||||||| || |||||||||| ||||||  ||||| ||| ||||||||||||||| ||  |||| |||||   |||  |    
T  20112119 aacaactaaagagaattggaaatacccatatgatgttcctgaatgtgttttgtctcgtctcacaacatgtaacattgtaggctatgaagctttcgaacat 20112218  T
Q  120 gattttctatttgcaatatatatcttgaagaatgcaagacctttacaggatatgacaat 178  Q
    ||||||| |||||||| |||||| ||| |||||||||||| | |||||| |||||||||    
T  20112219 gattttcaatttgcaacatatattttgcagaatgcaagacttctacaggttatgacaat 20112277  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 17392606 - 17392741
Alignment:
Q  40 aatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaatata 139  Q
    |||| |||||||||||||| || ||||||  ||||||||| |||| || | |  ||||| ||||| |||||   ||||||||||||| ||| |||| |||    
T  17392606 aatatccagatcatgttccagaatgtgtttcgtctcatctaacaaaatttgaagttatagactatgaagcttgcgaagctgattttcgattcgcaacata 17392705  T
Q  140 tatcttgaagaatgcaagacctttacaggatatgac 175  Q
    ||| ||| ||||||| |||| |||||| | ||||||    
T  17392706 tattttgcagaatgcgagacttttacaagttatgac 17392741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 19653801 - 19653696
Alignment:
Q  22 caaccaaagatgataggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctga 121  Q
    |||||||||  ||| |||||||||||  |||||||||||| ||||| | |||||  || ||||||||||  |||  ||||||| ||||| | ||||||||    
T  19653801 caaccaaagcagattggaaatacccatgtcatgttcctgaatgtgtcacgtctcgcctaacaacatgtagaattgaaaactatgaagcttctgaagctga 19653702  T
Q  122 ttttct 127  Q
    ||||||    
T  19653701 ttttct 19653696  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 19807088 - 19807229
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||| ||||| ||||||||||||| |||||||  ||| |||| ||||||||| | ||   | |||||||||||   |||||||| |||| ||||||||     
T  19807088 ggaaacacccatatcatgttcctgaatgtgttacctctaatctaacaacatgtgaaatcgaagactatcaagctatggaagctgactttcaatttgcaac 19807187  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatgacaat 178  Q
    |||||| ||| | ||||||||   |||||||| |||| ||||    
T  19807188 atatattttgcaaaatgcaagggttttacaggttatggcaat 19807229  T

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Target: scaffold0009 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 40799 - 40937
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||||||||||  ||| |||| ||| |||||| |||  ||||||||||||  |||||||      
T  40799 ggaaataccaagatcatgttcctgaatgtgtttcgtctcatcttacaacaattaatattacaaattatcaaactgtggaagctgattttaaatttgcatc 40898  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatgac 175  Q
     ||||| |||||||| ||||||| |||| ||||||||||    
T  40899 gtatatattgaagaacgcaagacttttaaaggatatgac 40937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 173
Target Start/End: Original strand, 21922 - 22058
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||||||| ||||||| ||||||| ||||||  |||||||||||||||||| || |||| ||| |||||| |||  ||||||||||||| |||| ||      
T  21922 ggaaataccaagatcatattcctgaatgtgtttcgtctcatcttacaacatgcaatattacaaattatcaaactgtggaagctgattttcaattttcatc 22021  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatg 173  Q
     ||||| |||||||| || | || |||| ||||||||    
T  22022 gtatatattgaagaacgcgaaacttttaaaggatatg 22058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 34169 - 34307
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||||||| | ||||| ||||||| ||||||   |||||||||||||| ||||| |||| ||| | |||| | |  ||||||||||||| |||||||      
T  34169 ggaaataccgaaatcatattcctgaatgtgtttcatctcatcttacaacgtgtaatattaaaaattttcaaaccgtggaagctgattttcaatttgcagc 34268  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatgac 175  Q
     ||||| |||| |||||| |||| |||| ||||| ||||    
T  34269 gtatatattgatgaatgcgagacttttaaaggatttgac 34307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 173
Target Start/End: Complemental strand, 16258317 - 16258181
Alignment:
Q  37 ggaaatacccagatcatgttcctgagtgtgttaggtctcatcttacaacatgtaacattataaactatcaagctgcagaagctgattttctatttgcaat 136  Q
    ||||||||||| ||   |||||||||||||||   || ||| | |||||||| || ||| || ||||||| ||   |||||||||||||| ||||| ||     
T  16258317 ggaaatacccatatacggttcctgagtgtgtttcatcccatttaacaacatgcaaaattttagactatcatgccatagaagctgattttcgatttgtaac 16258218  T
Q  137 atatatcttgaagaatgcaagacctttacaggatatg 173  Q
    |||||| |||   |||||||||| |||||||| ||||    
T  16258217 atatattttgcgaaatgcaagacatttacaggttatg 16258181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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