View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20295_low_2 (Length: 542)
Name: NF20295_low_2
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20295_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 529
Target Start/End: Complemental strand, 35073629 - 35073118
Alignment:
| Q |
18 |
catgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073629 |
catgatattgatgcagtacctataggctatagctataatcacaaaataatgtactagatacaattttaaaattaattaaggcacgcgcttaaaaccaaaa |
35073530 |
T |
|
| Q |
118 |
gctttgtatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaaccagccca |
217 |
Q |
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| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073529 |
gttttttatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaaccagccca |
35073430 |
T |
|
| Q |
218 |
aagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggtatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073429 |
aagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggtatt |
35073330 |
T |
|
| Q |
318 |
ccaccccccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacggcattcaaacagatgctgcgttaatgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35073329 |
ccaccccccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacggcattcaaacagatgctgcgttaatgt |
35073230 |
T |
|
| Q |
418 |
cccttgaggcatatgctcatacaccaaaagcctctcattgccattgatgcagtatcccaaaagggcaaccaaatgtctatgcctaaccttagtaagaaca |
517 |
Q |
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| T |
35073229 |
cccttgaggcatatgctcatacaccaaaagcctctcattgccattgatgcagtatcccaaaagggcaaccaaatgtctatgcctaaccttagtaagaaca |
35073130 |
T |
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| Q |
518 |
ccgatctctgct |
529 |
Q |
| |
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|| ||||||||| |
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| T |
35073129 |
ccaatctctgct |
35073118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 124 - 529
Target Start/End: Original strand, 38160024 - 38160429
Alignment:
| Q |
124 |
tatacctgcatactcgggtgcaagatatccaaatgttccagccaactttgtctcaacagaataattcccgtccggtgcgtttttaaccagcccaaagtct |
223 |
Q |
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||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| || ||||| || || |||||||| |||||||||| |||||| ||| |
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| T |
38160024 |
tatacctgcatactcaggtgccaaatatccaaatgttccagccaaccttgtctcgacggaatatttgccatccggtgcatttttaaccaacccaaaatct |
38160123 |
T |
|
| Q |
224 |
gcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggtattccaccc |
323 |
Q |
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|||||||||||||||||||||||||| || ||||| || || ||||||||||| || ||||||||||||||||||||||||||||||| |||||| || | |
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| T |
38160124 |
gcaacctttgctctcatgtcatcacccaacagtatgttggagggttttaagtccctgtgaatgaagctttgctgagctaagctgtgcaagtattctactc |
38160223 |
T |
|
| Q |
324 |
cccgtccaacatccaaagctattatcaacctttgtttccatgtcaaaggagtgtacccatgttcacggcattcaaacagatgctgcgttaatgtcccttg |
423 |
Q |
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| ||| | ||||||||||||||| | ||| ||| ||| |||||||||| | | |||| ||||| || ||||||||||| ||||||||||| ||||| |
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| T |
38160224 |
ctcgtgctacatccaaagctattgctaccctctgtaaccaagtcaaaggagcgcatccattttcaccccaatcaaacagatgttgcgttaatgttccttg |
38160323 |
T |
|
| Q |
424 |
aggcatatgctcatacaccaaaagcctctcattgccattgatgcagtatcccaaaagggcaaccaaatgtctatgcctaaccttagtaagaacaccgatc |
523 |
Q |
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|||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||| | ||| |
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| T |
38160324 |
aggcatatactcatacaccaaaagcctttcattgccatttatgcagtatcctaaaagagcaaccaaatgcctatgcctaactttagtcagaactgcaatc |
38160423 |
T |
|
| Q |
524 |
tctgct |
529 |
Q |
| |
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|||||| |
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|
| T |
38160424 |
tctgct |
38160429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 336
Target Start/End: Complemental strand, 33056714 - 33056593
Alignment:
| Q |
215 |
ccaaagtctgcaacctttgctctcatgtcatcacctaatagtatatttgatggttttaagtctctatgaatgaagctttgctgagctaagctgtgcaggt |
314 |
Q |
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||||| ||||| |||||||| ||||| ||||| || | || |||||||| ||||| |||||||| || ||||||||||| ||||| ||||| || |||| |
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| T |
33056714 |
ccaaaatctgcgacctttgccctcatatcatctccaaggagaatatttgaaggtttcaagtctctgtgtatgaagctttgatgagccaagctatgtaggt |
33056615 |
T |
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| Q |
315 |
attccaccccccgtccaacatc |
336 |
Q |
| |
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| || || |||| | ||||||| |
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| T |
33056614 |
actcaacaccccttgcaacatc |
33056593 |
T |
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