View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20295_low_3 (Length: 504)
Name: NF20295_low_3
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20295_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 9733881 - 9733608
Alignment:
| Q |
1 |
agagaaagaaacagcactgtgaagaactgcaacattattatgaaacaagagcagaaaaaagcaacaacgttggcaagttggtaacgtggattcgttcagg |
100 |
Q |
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| T |
9733881 |
agagaaagaaacagcactgtgaagaactgcaacattattatgaaacaagagcagaaaaaagcaacaacgttggcaagttggtaacgtggattcgttcagg |
9733782 |
T |
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| Q |
101 |
ttcttttgggagaaacaatcaaagacaacgacatcacctaaaggaaggaagtgaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaa |
200 |
Q |
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| T |
9733781 |
ttcttttgggagaaacaatcaaagacaaagacatcacctaaaggaaggaagagaaaaacaactcttcaaaaagttggttttggttttgcagcttcaacaa |
9733682 |
T |
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| Q |
201 |
gtgaaatcaaatgagttaaacaaaaaagtgatctttgatttt----cattgtcactcaccaacaaacccaagac |
270 |
Q |
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| T |
9733681 |
gtgaaatcaaatgagttaaacaaaaaagtgatctttgattttcattcattgtcactcaccaacaaacccaagac |
9733608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 343 - 487
Target Start/End: Complemental strand, 9733531 - 9733387
Alignment:
| Q |
343 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
442 |
Q |
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| T |
9733531 |
catgaagttagtactaccttatttttatgtgtgtaactgaaaaaccaaaaacatgcatttaactctcatcatttctggttcatgttttctctctcatgag |
9733432 |
T |
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| Q |
443 |
ttattgatgggttaatctattagtggctactttcaaggagcttct |
487 |
Q |
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| T |
9733431 |
ttattgatgggttaatctattagtggctactttcaaggagcttct |
9733387 |
T |
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