View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20295_low_9 (Length: 301)

Name: NF20295_low_9
Description: NF20295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20295_low_9
NF20295_low_9
[»] chr2 (22 HSPs)
chr2 (1-285)||(16576162-16576445)
chr2 (58-289)||(38576811-38577041)
chr2 (16-201)||(16863386-16863570)
chr2 (16-241)||(35370327-35370552)
chr2 (46-164)||(2248934-2249052)
chr2 (90-213)||(9050074-9050197)
chr2 (104-213)||(28282667-28282776)
chr2 (125-201)||(17606589-17606665)
chr2 (54-149)||(34176610-34176705)
chr2 (78-203)||(34176695-34176820)
chr2 (93-188)||(38333818-38333913)
chr2 (92-160)||(34176882-34176948)
chr2 (90-213)||(38576726-38576840)
chr2 (81-226)||(25606360-25606506)
chr2 (122-162)||(2909857-2909897)
chr2 (90-169)||(13712743-13712822)
chr2 (108-161)||(35373728-35373781)
chr2 (54-179)||(13712902-13713029)
chr2 (93-169)||(35371117-35371193)
chr2 (132-195)||(13784444-13784507)
chr2 (75-139)||(40374123-40374184)
chr2 (101-237)||(9050219-9050356)
[»] chr5 (27 HSPs)
chr5 (90-230)||(2243248-2243388)
chr5 (60-228)||(40483655-40483823)
chr5 (90-212)||(973114-973236)
chr5 (57-203)||(39808191-39808337)
chr5 (59-209)||(17736852-17737001)
chr5 (58-225)||(22780280-22780448)
chr5 (128-238)||(17739907-17740018)
chr5 (90-203)||(17736713-17736826)
chr5 (80-216)||(41264366-41264503)
chr5 (101-213)||(7215417-7215529)
chr5 (59-141)||(972801-972883)
chr5 (90-234)||(7215224-7215368)
chr5 (94-211)||(41264536-41264653)
chr5 (104-188)||(2822597-2822681)
chr5 (86-162)||(14138544-14138620)
chr5 (117-177)||(40483880-40483940)
chr5 (75-142)||(37077641-37077707)
chr5 (93-163)||(22780174-22780244)
chr5 (77-162)||(972874-972959)
chr5 (90-202)||(7982214-7982327)
chr5 (90-163)||(37077763-37077836)
chr5 (115-230)||(5205469-5205585)
chr5 (105-156)||(39730312-39730363)
chr5 (118-235)||(26105266-26105383)
chr5 (107-160)||(7113616-7113669)
chr5 (119-164)||(26105493-26105538)
chr5 (45-160)||(7982382-7982497)
[»] chr7 (24 HSPs)
chr7 (54-289)||(27651383-27651616)
chr7 (90-242)||(23944079-23944231)
chr7 (90-164)||(34891536-34891610)
chr7 (90-194)||(32138854-32138958)
chr7 (16-164)||(43208674-43208823)
chr7 (119-240)||(32962311-32962434)
chr7 (55-145)||(4674876-4674966)
chr7 (83-161)||(33192336-33192414)
chr7 (144-239)||(31152823-31152919)
chr7 (93-229)||(34891371-34891507)
chr7 (45-227)||(757877-758062)
chr7 (90-239)||(31171384-31171535)
chr7 (90-213)||(42012804-42012926)
chr7 (109-162)||(3191567-3191620)
chr7 (120-205)||(33362369-33362454)
chr7 (104-240)||(44754928-44755065)
chr7 (107-224)||(22593510-22593624)
chr7 (110-160)||(8354394-8354444)
chr7 (16-113)||(32988567-32988665)
chr7 (90-139)||(29152350-29152399)
chr7 (90-142)||(8900670-8900722)
chr7 (60-157)||(29152493-29152587)
chr7 (103-155)||(31152738-31152790)
chr7 (122-229)||(42012670-42012775)
[»] chr1 (31 HSPs)
chr1 (56-240)||(38839582-38839765)
chr1 (90-246)||(49897873-49898030)
chr1 (90-231)||(3232131-3232273)
chr1 (16-213)||(52432590-52432786)
chr1 (90-198)||(68100-68208)
chr1 (56-263)||(34601509-34601715)
chr1 (115-213)||(3367810-3367908)
chr1 (101-240)||(5500739-5500878)
chr1 (90-164)||(46080974-46081048)
chr1 (117-209)||(7104295-7104387)
chr1 (90-205)||(52432836-52432951)
chr1 (128-226)||(67967-68065)
chr1 (75-160)||(3231946-3232031)
chr1 (75-202)||(15321029-15321156)
chr1 (147-230)||(41148568-41148651)
chr1 (75-145)||(2534433-2534503)
chr1 (119-236)||(34601366-34601484)
chr1 (90-202)||(44330466-44330578)
chr1 (47-123)||(45136757-45136833)
chr1 (90-203)||(24874601-24874715)
chr1 (90-155)||(10775166-10775231)
chr1 (86-187)||(35956982-35957083)
chr1 (59-112)||(42819471-42819524)
chr1 (107-195)||(10775037-10775125)
chr1 (125-213)||(12145005-12145093)
chr1 (90-188)||(24873768-24873867)
chr1 (90-168)||(42819624-42819702)
chr1 (59-149)||(46080821-46080910)
chr1 (108-169)||(7749024-7749085)
chr1 (75-123)||(3367746-3367794)
chr1 (132-188)||(7104215-7104271)
[»] chr6 (11 HSPs)
chr6 (103-237)||(32047190-32047325)
chr6 (90-240)||(32342603-32342753)
chr6 (75-213)||(20067904-20068042)
chr6 (136-240)||(32047039-32047144)
chr6 (90-240)||(20068089-20068239)
chr6 (101-160)||(23577165-23577224)
chr6 (107-236)||(7556040-7556171)
chr6 (76-136)||(20206481-20206541)
chr6 (76-136)||(22100504-22100564)
chr6 (179-289)||(26236690-26236799)
chr6 (56-112)||(32046954-32047010)
[»] chr8 (20 HSPs)
chr8 (90-240)||(29969101-29969252)
chr8 (59-246)||(7405477-7405661)
chr8 (59-162)||(34695801-34695904)
chr8 (90-192)||(35574610-35574712)
chr8 (62-192)||(37010315-37010445)
chr8 (35-197)||(7590280-7590442)
chr8 (73-177)||(6630524-6630628)
chr8 (90-204)||(32166593-32166707)
chr8 (92-169)||(12736059-12736136)
chr8 (132-195)||(29093581-29093644)
chr8 (138-227)||(32166735-32166825)
chr8 (115-235)||(6630308-6630429)
chr8 (46-118)||(39280912-39280984)
chr8 (16-237)||(12782311-12782527)
chr8 (115-235)||(6803868-6803989)
chr8 (87-227)||(35574743-35574884)
chr8 (75-148)||(30547336-30547409)
chr8 (56-160)||(31475009-31475111)
chr8 (103-157)||(33897753-33897807)
chr8 (137-213)||(26086801-26086876)
[»] chr4 (11 HSPs)
chr4 (90-239)||(22050855-22051005)
chr4 (120-289)||(25062352-25062522)
chr4 (90-163)||(15131574-15131647)
chr4 (66-192)||(20512797-20512923)
chr4 (90-213)||(25062493-25062616)
chr4 (115-164)||(22050725-22050774)
chr4 (90-162)||(20512668-20512740)
chr4 (93-156)||(4115389-4115452)
chr4 (101-160)||(25234202-25234261)
chr4 (90-164)||(54000045-54000119)
chr4 (79-139)||(44591971-44592031)
[»] chr3 (18 HSPs)
chr3 (90-234)||(39341202-39341347)
chr3 (135-282)||(2562969-2563115)
chr3 (56-240)||(7938035-7938220)
chr3 (90-241)||(54437809-54437961)
chr3 (75-196)||(13283806-13283927)
chr3 (54-183)||(54437604-54437733)
chr3 (105-213)||(20519245-20519353)
chr3 (45-139)||(7641806-7641900)
chr3 (86-202)||(48646411-48646526)
chr3 (61-195)||(34762089-34762222)
chr3 (133-235)||(51260553-51260654)
chr3 (16-164)||(46303299-46303447)
chr3 (75-155)||(21570356-21570436)
chr3 (92-160)||(42091793-42091861)
chr3 (75-154)||(6138487-6138566)
chr3 (75-192)||(20519434-20519556)
chr3 (108-212)||(45228277-45228378)
chr3 (90-172)||(34761943-34762025)
[»] scaffold0136 (1 HSPs)
scaffold0136 (123-227)||(36907-37012)
[»] scaffold1743 (1 HSPs)
scaffold1743 (75-157)||(772-853)
[»] scaffold0564 (2 HSPs)
scaffold0564 (16-141)||(5456-5582)
scaffold0564 (126-163)||(5298-5335)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 16576162 - 16576445
Alignment:
Q  1 atgtagataatgatattttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaatt 100  Q
    ||||||||||||||||||||||||||| |  ||||| ||||||||||||||  |||||||||||||||||| ||||||||||| |||| ||||||||||     
T  16576162 atgtagataatgatattttctacattatccttagatcaattggcgtaatttagccctatcaaagaaaaattatcttttcttcaccttttttcttacaatc 16576261  T
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576262 aattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 16576361  T
Q  201 tagaggtaaattaacccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcat 285  Q
    ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  16576362 taggggtaaattaacccaattcatcaaggggtaacgtaggccccacggatagagtttttt-cttacaatcatttatcattttcat 16576445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 289
Target Start/End: Complemental strand, 38577041 - 38576811
Alignment:
Q  58 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 157  Q
    ||||||||||||| |  |||||||||| |||||| ||| ||| ||||||||||||| ||| |||||||| ||| ||||||||||| ||||||||||||||    
T  38577041 atcaaagaaaaatctcattttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgt 38576942  T
Q  158 gatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggtaatgtaggccccacggatagagttt 257  Q
    ||| ||| |||| ||||| ||| |||| ||||||| || |||||||  |||||||| |||||||||| ||||||||||||||||| ||  |||| || ||    
T  38576941 gatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaattaccccaattcataaaggggtaatgtaggcctcatcgata-aggtt 38576843  T
Q  258 tttccttataatcatttaccattttcatctca 289  Q
    ||| |||| ||||| |||||||||||||||||    
T  38576842 ttttcttacaatcagttaccattttcatctca 38576811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 16863386 - 16863570
Alignment:
Q  16 ttttctacattacctctagatgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcct 115  Q
    |||||||||||||| |   ||||||||| |||||||  || |||||||||||||||   |||||||| |||||||||||||||| ||||||||||||| |    
T  16863386 ttttctacattaccccaccatgaattggggtaatttatccatatcaaagaaaaattcctttttcttc-tctttattcttacaatcagttaccattttcat 16863484  T
Q  116 ctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatt 201  Q
    ||||||||||||||| |||||||||| ||| |||||| ||||||||| | |||| ||||||  ||||||||||| ||||| |||||    
T  16863485 ctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctccttcgttatagaatcgaatcctacttgtcatt 16863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 35370327 - 35370552
Alignment:
Q  16 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttat--tcttacaattagttaccatttt 112  Q
    |||||||||||||| || |||||||| |  ||||||  || |||||||||||||||   ||||||||||||||||   ||||||||| ||||||||||||    
T  35370327 ttttctacattaccccttgatgaattagtagtaattgaccactatcaaagaaaaat---cttttcttcatctttacgatcttacaatcagttaccatttt 35370423  T
Q  113 cctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatt 212  Q
      ||||||||| | ||||||||||| ||||||||||||||||||| ||  || |||||||  |||||| |||||| ||||||| |||||||  | |||||    
T  35370424 aatctcaagaataccaaacttcttcgtctccttcattcaacatgtaatacccatctcatttattccag-atcgaaacatacttgtcattaggagcaaatt 35370522  T
Q  213 aacc-caattcatcaaggggtaatgtaggc 241  Q
    | || ||||||||||| |||||||||||||    
T  35370523 accctcaattcatcaacgggtaatgtaggc 35370552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 2249052 - 2248934
Alignment:
Q  46 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 145  Q
    |||||| || |||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||    
T  2249052 taatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttcttcatcttctt 2248953  T
Q  146 cattcaacatgtgatctcc 164  Q
     ||| |||||||| |||||    
T  2248952 aattgaacatgtggtctcc 2248934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 9050197 - 9050074
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||| || ||||||||||||| | | ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||||    
T  9050197 ttcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcattcgttacaaaatcgaatc 9050098  T
Q  190 atacttatcattagaggtaaatta 213  Q
    || ||| ||||||  |||||||||    
T  9050097 atgcttgtcattaagggtaaatta 9050074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 28282667 - 28282776
Alignment:
Q  104 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattag 203  Q
    |||||||||| |||| | ||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||| |||| |||  ||||| | |||||    
T  28282667 taccattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattag 28282766  T
Q  204 aggtaaatta 213  Q
     |||||||||    
T  28282767 gggtaaatta 28282776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 17606665 - 17606589
Alignment:
Q  125 atcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatt 201  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |||||| |||| ||||| |||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctacttgtcatt 17606589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 34176610 - 34176705
Alignment:
Q  54 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 149  Q
    |||||| | |||| |||| | |||||||||||||||||  |||||| ||||||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  34176610 ccctattagagaacaattatattttcttcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcatt 34176705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 34176695 - 34176820
Alignment:
Q  78 tcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttc 177  Q
    ||||| || ||| ||||||||| |||||| ||| ||  || | |||||||||| |||||||||||||||||| ||||| |||||| | |||| ||||||     
T  34176695 tcttcttcattactcttacaatcagttactattatcaccttaggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctctttcgttt 34176794  T
Q  178 cagaatcgaatcatacttatcattag 203  Q
    || |||||||||||| || |||||||    
T  34176795 cataatcgaatcatatttttcattag 34176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 38333913 - 38333818
Alignment:
Q  93 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    |||||||||||||| |||||| ||||||||||||| |||||||| ||||| ||| |||||| ||| |||| | |||  ||||||| ||||||||||    
T  38333913 ttacaattagttactattttcatctcaagaacatctaacttcttaatctctttcgttcaacgtgtcatcttcatctttttcgttctagaatcgaat 38333818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 34176882 - 34176948
Alignment:
Q  92 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    |||||||||||||||||||||| ||||||||||  ||||||| | ||||| ||||||||||||||||||    
T  34176882 cttacaattagttaccattttcatctcaagaac--caaacttgtacatcttcttcattcaacatgtgat 34176948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 38576840 - 38576726
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| ||||||||||||| |||||| |  |||||||||||||||         |||||||||| ||||| | || ||| ||||| |||||||||    
T  38576840 ttcttacaatcagttaccattttcatctcaatataatcaaacttcttcat---------tcaacatgtgttctccatatccttcattccaaaatcgaatc 38576750  T
Q  190 atacttatcattagaggtaaatta 213  Q
    |||||| ||||| |||||||||||    
T  38576749 atacttgtcatttgaggtaaatta 38576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 25606360 - 25606506
Alignment:
Q  81 tcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccag 180  Q
    |||||||| |||||||| | |  || |||||||  ||| ||||||||||| ||||||||||  |||||||||||| |||| | | |||| |||||||||     
T  25606360 tcatcttttttcttacactcaaatatcattttcaactccagaacatcaaaattcttcatctgtttcattcaacatatgatatacatctccttcgttccat 25606459  T
Q  181 aatcgaatcatacttatcattagaggtaaattaacc-caattcatca 226  Q
    || |||||| ||||| | ||||  ||||||||| || ||||||||||    
T  25606460 aaacgaatcctacttgttattaagggtaaattaccctcaattcatca 25606506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 2909857 - 2909897
Alignment:
Q  122 aacatcaaacttcttcatctccttcattcaacatgtgatct 162  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  2909857 aacatcaaacttcttcatctccttcattcaacatgtaatct 2909897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 13712822 - 13712743
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 169  Q
    ||||||| || ||||||||||| | ||| |||||||||||||||||| |||| ||| ||||||||| | |||||| ||||    
T  13712822 ttcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 35373728 - 35373781
Alignment:
Q  108 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 161  Q
    |||||| |||||||||| |||||||||||| |  ||||||||||||||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgatc 35373781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 13713029 - 13712902
Alignment:
Q  54 ccctatcaaagaaaaat--tttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattca 151  Q
    |||||||||||||||||  | | |||| || || ||||||| ||||||  |||||||||||  ||| || ||  |||||||| || |||||||||||| |    
T  13713029 ccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcattta 13712930  T
Q  152 acatgtgatctccttctcattcgttcca 179  Q
    ||||||||||| | |||| || ||||||    
T  13712929 acatgtgatctacatctctttggttcca 13712902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 35371117 - 35371193
Alignment:
Q  93 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 169  Q
    ||||||| | ||||||||||| | ||||||||||||||||||||  |  |||||||| |||||||||| ||| ||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 13784444 - 13784507
Alignment:
Q  132 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 195  Q
    |||||||||||||||||||||||| |||| |   | |||||||||| ||||||||||| |||||    
T  13784444 ttcttcatctccttcattcaacatatgatatatatttcattcgttcaagaatcgaatcctactt 13784507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 40374184 - 40374123
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 139  Q
    ||||||||||||||||| ||| |||||||||||| |||| | ||   ||||||||||||||||||    
T  40374184 ttttcttcatctttattattaaaattagttaccactttcatatc---aacatcaaacttcttcat 40374123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 9050356 - 9050219
Alignment:
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 200  Q
    |||| |||||||| ||| || || ||||| | | |||||||| |||||| ||||| |||| | | |||  || ||| || ||||||||| ||||  ||||    
T  9050356 agttgccattttcatcttaaaaatatcaagcattttcatctctttcatttaacatttgatttacatcttctttgtttcataatcgaatcctactagtcat 9050257  T
Q  201 tagaggtaaattaacc-caattcatcaaggggtaatgt 237  Q
    ||||||||||||| || |||||||||||| | ||||||    
T  9050256 tagaggtaaattaccctcaattcatcaagagataatgt 9050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 2243388 - 2243248
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||  ||||||| ||||||||||     
T  2243388 ttcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaatt 2243289  T
Q  190 atacttatcattagaggtaaattaacccaattcatcaaggg 230  Q
     ||||| ||||||||||||||||| ||||||||||||||||    
T  2243288 ttacttgtcattagaggtaaattaccccaattcatcaaggg 2243248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 228
Target Start/End: Original strand, 40483655 - 40483823
Alignment:
Q  60 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtga 159  Q
    |||||||||| ||  |||| |||||||||||||||| || || |||| |||||| ||| || |||||||||||||||||||||  |||||||||||||||    
T  40483655 caaagaaaaaattcatttttttcatctttattcttaaaaatatttactattttcatctaaa-aacatcaaacttcttcatctcactcattcaacatgtga 40483753  T
Q  160 tctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-caattcatcaag 228  Q
    ||| | |||||||||||||| ||||||||||||||||||||| | ||||| ||| || ||||||||||||    
T  40483754 tcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaatttaccctcaattcatcaag 40483823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 973114 - 973236
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||||||||| ||||||  |||||| ||||| ||| |||||||||||||| |||||||||||||||| | |||||||| || || ||| |||||    
T  973114 ttcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcattcattacaaaattgaatc 973213  T
Q  190 atacttatcattagaggtaaatt 212  Q
    ||| ||||||||| | |||||||    
T  973214 atatttatcattaaaagtaaatt 973236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 203
Target Start/End: Complemental strand, 39808337 - 39808191
Alignment:
Q  57 tatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 156  Q
    ||||||||||||||| |||||| ||||| |||||||||| ||  ||||| |||||||  || |||| |||||||||| ||||||||||||||| |||||     
T  39808337 tatcaaagaaaaattctcttttattcatatttattcttaaaacaagttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacata 39808238  T
Q  157 tgatctccttctcattcgttccagaatcgaatcatacttatcattag 203  Q
    ||||||   |||| ||| ||| |||||||||||| |||| |||||||    
T  39808237 tgatctatgtctctttcattctagaatcgaatcacacttgtcattag 39808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 209
Target Start/End: Complemental strand, 17737001 - 17736852
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 158  Q
    |||||||||||| || |||| ||||||||||| ||||||||   ||||||||||  ||| ||||| |||||| ||||| | || |||| |||||||| ||    
T  17737001 tcaaagaaaaatcttatttttttcatctttat-cttacaatcgattaccatttttatcttaagaatatcaaatttctttaccttcttccttcaacatatg 17736903  T
Q  159 atctccttctcattcgttccagaatcgaatcatacttatcattagaggtaa 209  Q
     | |||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  17736902 gtttccttctcattcgttctacaatagaatcatacttgtcattagaggtaa 17736852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 22780448 - 22780280
Alignment:
Q  58 atcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 157  Q
    ||||||||||||  |  ||||||| ||||||| | || |||| ||| ||||||||| |||||| ||||  |||||||||||| |||||||||||||||||    
T  22780448 atcaaagaaaaaactcattttcttaatctttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgt 22780349  T
Q  158 gatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatc 225  Q
    ||||| | || | ||||||  |||||| ||||||| || ||||||| | ||||||| | ||||||||||    
T  22780348 gatcttcatccctttcgttttagaatcaaatcatagttgtcattagggataaattacctccaattcatc 22780280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 17739907 - 17740018
Alignment:
Q  128 aaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggt-aaattaacccaattcatca 226  Q
    |||||||||||||| ||||||| |||||||||| | | |||| ||||||||||||||||||| ||||||| ||||| | | || || || ||||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattagggatgaatttcactcaattcatca 17740006  T
Q  227 aggggtaatgta 238  Q
    ||||||||||||    
T  17740007 aggggtaatgta 17740018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 17736826 - 17736713
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||  | ||||||||||| |||||| || || |||||||||||||| ||||| |||||||||||||||  |||  ||||||| |||||||||||    
T  17736826 ttcttacaaccaattaccattttcatctcaataatattaaacttcttcatcttcttcactcaacatgtgatctctatcttcttcgttctagaatcgaatc 17736727  T
Q  190 atacttatcattag 203  Q
     ||||| |||||||    
T  17736726 gtacttgtcattag 17736713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 41264366 - 41264503
Alignment:
Q  80 ttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgtt-cc 178  Q
    |||||||||||| | | ||| ||||  ||||||| |||||||||||| |||||| ||||| |  ||||||||||||||||||| | |||| ||||||  |    
T  41264366 ttcatctttattatgataatgagttgtcattttcatctcaagaacattaaactttttcatattgttcattcaacatgtgatcttcatctctttcgttatc 41264465  T
Q  179 agaatcgaatcatacttatcattagaggtaaattaacc 216  Q
    | |||||||||||| || | ||||||||||||||||||    
T  41264466 ataatcgaatcataattgttattagaggtaaattaacc 41264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 7215529 - 7215417
Alignment:
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 200  Q
    |||||| |||||| | |||||||||| |||||| ||||| | |||||||||||||||||||| | |||| |||||||||||| || |||||| || | ||    
T  7215529 agttactattttcatatcaagaacattaaactttttcatattcttcattcaacatgtgatcttcatctctttcgttccagaaccgcatcatagttgttat 7215430  T
Q  201 tagaggtaaatta 213  Q
    |||| ||||||||    
T  7215429 tagatgtaaatta 7215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 972801 - 972883
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatct 141  Q
    ||||||||||| ||  |||| ||| |||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  972801 tcaaagaaaaaattcatttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct 972883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 7215368 - 7215224
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||  ||| ||||||| || ||||||||||| |||  ||| ||| | ||| |||||    
T  7215368 ttcttacaatcaactaccattttcatctcaagaacatcaaacttctt-ttcttcttcattgaatatgtgatctccatctttttcattctaaaattgaatc 7215270  T
Q  190 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaa 234  Q
    ||| |||||||||  ||||||||| ||| |||||| |||| |||||    
T  7215269 atatttatcattaacggtaaattaccccgaattcaacaagaggtaa 7215224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 41264536 - 41264653
Alignment:
Q  94 tacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatac 193  Q
    |||||| |||||| |||||| | |||||||||||||| ||||||||||| |||||| ||| || ||| ||| | |  || |||| | ||||||||||||     
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaacttgagatttccatattttttgttctaaaatcgaatcatat 41264635  T
Q  194 ttatcattagaggtaaat 211  Q
    ||||||||||||||||||    
T  41264636 ttatcattagaggtaaat 41264653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 2822681 - 2822597
Alignment:
Q  104 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    |||||||||| | |||| ||||| ||| ||||||||||||||| || ||| |||||||||| |||||||| || |||||||||||    
T  2822681 taccattttcatttcaaaaacattaaatttcttcatctccttcctttaacgtgtgatctccatctcattcatttcagaatcgaat 2822597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 14138544 - 14138620
Alignment:
Q  86 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 162  Q
    |||||||||||||| | ||||||||||| ||| ||||| |||||||||  ||||||| |||||||||||||| ||||    
T  14138544 tttattcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatct 14138620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 40483880 - 40483940
Alignment:
Q  117 tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttc 177  Q
    ||||||||||| ||||||||||||| ||| | |||||||||||||||| ||||||||||||    
T  40483880 tcaagaacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcgttc 40483940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 37077641 - 37077707
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 142  Q
    |||||| |||||||||||||| ||| ||||| ||||||| |||||||||||| |||||||||||||||    
T  37077641 ttttctccatctttattctta-aatcagttatcattttcatctcaagaacattaaacttcttcatctc 37077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 22780244 - 22780174
Alignment:
Q  93 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 163  Q
    ||||||| ||||||||||||  | |||| |||||||||||| ||||||| | |||||||||||||||||||    
T  22780244 ttacaatcagttaccatttttatttcaataacatcaaactttttcatctacgtcattcaacatgtgatctc 22780174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 972874 - 972959
Alignment:
Q  77 ttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 162  Q
    ||||||||||||||| ||  ||| |||| |||||||| || |||||| |||||| ||||||||||| |||||| ||||||| ||||    
T  972874 ttcttcatctttatttttgaaatcagttgccattttcatcacaagaaaatcaaatttcttcatctctttcatttaacatgttatct 972959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 7982327 - 7982214
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaactt-cttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    |||| ||||||||||| ||||||  |||||| |||||  || || ||||||||||||||||||||||||||| ||  |||| ||| || |||||| ||||    
T  7982327 ttctcacaattagttatcatttttatctcaaaaacatttaagtttcttcatctccttcattcaacatgtgatttctatctccttcatttcagaattgaat 7982228  T
Q  189 catacttatcatta 202  Q
     ||| |||||||||    
T  7982227 aatatttatcatta 7982214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Original strand, 37077763 - 37077836
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 163  Q
    |||||||||| ||||| ||||||| |||||| ||||||||| ||||| || |  ||||||||||||||||||||    
T  37077763 ttcttacaatcagttagcattttcatctcaaaaacatcaaatttcttaatttttttcattcaacatgtgatctc 37077836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 5205585 - 5205469
Alignment:
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 213  Q
    |||||| |||||||||||| || |||||||| ||| |||||||||||||| |||  ||||||  | |||||||||||  || ||||||  |||||| ||     
T  5205585 tctcaaaaacatcaaacttttttatctcctttattaaacatgtgatctccatctatttcgttttataatcgaatcatgattgtcattaagggtaaaatac 5205486  T
Q  214 acccaattcatcaaggg 230  Q
     ||||||||||||||||    
T  5205485 ccccaattcatcaaggg 5205469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 39730363 - 39730312
Alignment:
Q  105 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 156  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||| ||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacatg 39730312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 26105383 - 26105266
Alignment:
Q  118 caagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc 217  Q
    ||||||| |||||||||||||||| |||| || ||||| |||||  | |||| ||||||| ||||| |||||  |||| ||||||  | ||||||| |||    
T  26105383 caagaacgtcaaacttcttcatcttcttcgttgaacatatgatcctcatctc-ttcgttcaagaattgaatcccacttgtcattatggataaattacccc 26105285  T
Q  218 -aattcatcaaggggtaat 235  Q
     ||||||||||||||||||    
T  26105284 aaattcatcaaggggtaat 26105266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 7113669 - 7113616
Alignment:
Q  107 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    ||||||| ||||||||| || ||||||||||||||| |||||||||| ||||||    
T  7113669 cattttcatctcaagaatattaaacttcttcatctcattcattcaacgtgtgat 7113616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 26105538 - 26105493
Alignment:
Q  119 aagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||    
T  26105538 aagaacatcaaacttctccatctccttcatttcacatgtgatctcc 26105493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 7982497 - 7982382
Alignment:
Q  45 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcct 144  Q
    ||||||| ||||| |||||||||| |||    || || ||||||||| ||| ||| ||||||||||||| |||  ||||||||||| ||||||  ||| |    
T  7982497 gtaatttacccctttcaaagaaaattttcacctttttaatctttattgttaaaatcagttaccattttcatcttgagaacatcaaatttcttcgactctt 7982398  T
Q  145 tcattcaacatgtgat 160  Q
    || || ||||||||||    
T  7982397 tcttttaacatgtgat 7982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 289
Target Start/End: Complemental strand, 27651616 - 27651383
Alignment:
Q  54 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 153  Q
    ||||||||||||||||||   ||||||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||  || |||||||||||||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaacaact-catctccttcattcaac 27651519  T
Q  154 atgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaa-ttaacccaattcatcaaggggtaatgtaggccccacggatag 252  Q
    ||||||| ||| |||| | || || ||||| ||||||||||| |||| || |||||| |   |||||||||||||  |||||||||| || ||| |||||    
T  27651518 atgtgatatccatctcctccggtctagaattgaatcatacttttcataaggggtaaactccccccaattcatcaaaaggtaatgtagacctcaccgatag 27651419  T
Q  253 agttttttccttataatcatttaccattttcatctca 289  Q
     ||||||| |||| ||||| ||| |||||||||||||    
T  27651418 ggtttttt-cttacaatcaattatcattttcatctca 27651383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 23944079 - 23944231
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||| ||| |||| ||  |||||||||||||||    
T  23944079 ttcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatc 23944178  T
Q  190 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggcc 242  Q
    ||||||||||| || ||| ||| | ||| ||||||||||||| |||||||||||    
T  23944179 atacttatcatcaggggt-aatcatcccaaattcatcaagggataatgtaggcc 23944231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 34891536 - 34891610
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    ||||||| |||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34891536 ttcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctcc 34891610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 32138958 - 32138854
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||| |||  ||||||| |||| ||||||    
T  32138958 ttcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatcttcttcgttctagaagcgaatc 32138859  T
Q  190 atact 194  Q
    |||||    
T  32138858 atact 32138854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 43208674 - 43208823
Alignment:
Q  16 ttttctacattacctctagatgaattg-gcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 114  Q
    |||||||||||| | || ||||||||| | |||||||  ||||||| || ||||| ||  ||||||||||||||||||||||||| | ||||||||||      
T  43208674 ttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttatttttcttcatctttattcttacaatcaattaccattttta 43208773  T
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    | | ||||| |||||| | |||||| |||||| |||||| ||| ||||||    
T  43208774 ttttaagaatatcaaattccttcatttccttcgttcaacgtgtaatctcc 43208823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 32962434 - 32962311
Alignment:
Q  119 aagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagag-gtaaattaac-c 216  Q
    ||||| ||||||||| ||||||||||| ||||||||| |||||| | | |  || ||| || |||||||||||| ||||||||| ||  ||||||| | |    
T  32962434 aagaaaatcaaactttttcatctcctttattcaacatatgatctacatattttttgtttcaaaatcgaatcatatttatcattatagaataaattacctc 32962335  T
Q  217 caattcatcaaggggtaatgtagg 240  Q
    ||||||||||||||||||||||||    
T  32962334 caattcatcaaggggtaatgtagg 32962311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 145
Target Start/End: Original strand, 4674876 - 4674966
Alignment:
Q  55 cctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 145  Q
    ||||||||| ||||| |  |||||||| ||||||||| ||  ||||||||||||||||| ||||||||| ||||||||| || ||||||||    
T  4674876 cctatcaaacaaaaactcccttttctttatctttatttttgaaattagttaccattttcatctcaagaaaatcaaacttatttatctcctt 4674966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 33192414 - 33192336
Alignment:
Q  83 atctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 161  Q
    ||||||||| |||||| |||||||||||||| ||||||||| || ||| ||||| ||||| ||||||||||| ||||||    
T  33192414 atctttatttttacaagtagttaccattttcttctcaagaatattaaatttctttatctctttcattcaacaagtgatc 33192336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 31152919 - 31152823
Alignment:
Q  144 ttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtag 239  Q
    ||||||||| ||||||||||| |||| |||||| || ||||||||| ||||| | |||| ||||||||||  |||||||||||||| | ||||||||    
T  31152919 ttcattcaaaatgtgatctccatctctttcgtttcataatcgaatcctacttgttattataggtaaattacccccaattcatcaagtgataatgtag 31152823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 34891371 - 34891507
Alignment:
Q  93 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcata 192  Q
    ||||||||  ||| ||||||| | | |||||||||||||||||| |||| ||||||| ||||||||||||   |||| ||| ||||  ||||||||  ||    
T  34891371 ttacaattcattatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatctagatctctttcattcccaaatcgaattgta 34891470  T
Q  193 cttatcattagaggtaaattaacccaattcatcaagg 229  Q
     || |||| || ||||||||| |||| ||||||||||    
T  34891471 tttgtcatgaggggtaaattaccccagttcatcaagg 34891507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 227
Target Start/End: Complemental strand, 758062 - 757877
Alignment:
Q  45 gtaatttgcccctatcaaagaaaaattt--tcttttcttcatctttattcttacaa-ttagttaccattttcctctcaagaacatcaaacttcttcatct 141  Q
    ||||||| |||||||||||||||||| |  | |||| ||| |||||||| ||  || ||||||| ||||||| |||||| ||  | ||| || || ||||    
T  758062 gtaatttacccctatcaaagaaaaatctcatttttttttcttctttatttttttaaattagttatcattttcatctcaaaaatcttaaatttatttatct 757963  T
Q  142 ccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaaccc-aattcatcaa 227  Q
    ||||||||||||||||||||| | |||| ||| ||| | ||| ||||| ||||||| |||| | |||||||| ||| ||||||||||    
T  757962 ccttcattcaacatgtgatcttcatctccttcattctataattgaatcctacttattatta-atgtaaattatcccaaattcatcaa 757877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 239
Target Start/End: Complemental strand, 31171535 - 31171384
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaa-catcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    ||||| ||||||  |||||||||| |||  |||| | |||| ||||| |||||  ||||||||| ||||||| ||| |||| |||||| || ||||||||    
T  31171535 ttcttgcaattaaataccattttcatctttagaaacttcaatcttctacatctgtttcattcaaaatgtgatttccatctctttcgtttcataatcgaat 31171436  T
Q  189 catacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtag 239  Q
    | ||||| | |||| |||||||||| ||| ||||||||||| | ||||||||    
T  31171435 cctacttgttattataggtaaattacccccaattcatcaagtgataatgtag 31171384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 42012804 - 42012926
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||| ||| |||||||| |||  || |||||||||||||||| |||||||  || |||||||||||||||||| | |  ||||||| |||||  ||||    
T  42012804 ttcttagaatcagttaccacttttatcacaagaacatcaaactttttcatctattt-attcaacatgtgatctccatttacttcgttcaagaattaaatc 42012902  T
Q  190 atacttatcattagaggtaaatta 213  Q
     || ||||||||||| ||||||||    
T  42012903 ttatttatcattagaagtaaatta 42012926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 3191620 - 3191567
Alignment:
Q  109 ttttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 162  Q
    ||||| |||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  3191620 ttttcatctcaaaaacatcaaagttcttcatctcctttattcaacatgtgatct 3191567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 33362454 - 33362369
Alignment:
Q  120 agaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagag 205  Q
    |||||||||||||| || ||||||||||||||||||||||| | |  ||| || |||| | |||||||||||| ||| ||||||||    
T  33362454 agaacatcaaactttttaatctccttcattcaacatgtgatttacaactcttttgttctaaaatcgaatcatatttaccattagag 33362369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 44754928 - 44755065
Alignment:
Q  104 taccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattag 203  Q
    |||||||||| | || |||||||||||||||||| | |  ||||||||||||||||||| | |||| || | |||| ||||||||    ||||| |||||    
T  44754928 taccattttcatttctagaacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttgatccataatcgaattcggcttattattag 44755027  T
Q  204 aggtaaattaac-ccaattcatcaaggggtaatgtagg 240  Q
     ||||||||  | | ||||||||||||| |||||||||    
T  44755028 gggtaaattgcctcgaattcatcaagggataatgtagg 44755065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 22593624 - 22593510
Alignment:
Q  107 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagagg 206  Q
    ||||||| ||||||||||||||||||||   ||||  ||||||||||||||||| ||  |||| ||||||| | ||||||||| |  || ||||||| |     
T  22593624 cattttcatctcaagaacatcaaacttc---atctatttcattcaacatgtgatatctatctccttcgttctaaaatcgaatcgtttttgtcattaggga 22593528  T
Q  207 taaattaacccaattcat 224  Q
    ||||||  ||||||||||    
T  22593527 taaattgccccaattcat 22593510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 8354444 - 8354394
Alignment:
Q  110 tttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    |||| |||||||||||| |||||||| ||| ||||||||||||||||||||    
T  8354444 tttcatctcaagaacattaaacttctacatatccttcattcaacatgtgat 8354394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 32988665 - 32988567
Alignment:
Q  16 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttc 113  Q
    |||| ||||||| | || |||||||||| | |||||| | | ||||||||||||||  | ||||||||||||||||||||||||| || || |||||||    
T  32988665 ttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcattttc 32988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 29152399 - 29152350
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 139  Q
    |||||||||| |||||| |||||| |||||| ||||||||||||||||||    
T  29152399 ttcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 8900722 - 8900670
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctc 142  Q
    |||||||||| | ||||||||||  ||||||||||| ||||||||||||||||    
T  8900722 ttcttacaataaattaccatttttatctcaagaacaacaaacttcttcatctc 8900670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 29152587 - 29152493
Alignment:
Q  60 caaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 157  Q
    ||||||||||| | ||||||||||||||||||||   |||||| | | |||||  |||||| ||||| ||| || ||||||| |||||||||||||||    
T  29152587 caaagaaaaatctccttttcttcatctttattct--gaattagctgcgatttttatctcaaaaacattaaa-tttttcatctacttcattcaacatgt 29152493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 31152790 - 31152738
Alignment:
Q  103 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    ||||||||||| ||| || |||||||| ||||||||| || ||||||||||||    
T  31152790 ttaccattttcatcttaaaaacatcaatcttcttcatttctttcattcaacat 31152738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 42012670 - 42012775
Alignment:
Q  122 aacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaatt 221  Q
    ||||||||||||||| ||||  |||||| || ||||||| | | |||  ||||||||| ||||||||||||  | |||| || | ||||||| |||||||    
T  42012670 aacatcaaacttcttaatct--ttcatttaagatgtgatttacatctttttcgttccaaaatcgaatcatatatgtcatgagggataaattaccccaatt 42012767  T
Q  222 catcaagg 229  Q
     |||||||    
T  42012768 aatcaagg 42012775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 38839765 - 38839582
Alignment:
Q  56 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    ||||||||||||||| |  |||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||| |||||||| ||||    
T  38839765 ctatcaaagaaaaatctaatttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttcttcattcgacat 38839668  T
Q  156 gtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtagg 240  Q
    |||||||   |||  ||||||||| ||||||||| ||||| |||||||  || ||||| |  || |||||||||||||||||||||    
T  38839667 gtgatcttgatcttcttcgttccacaatcgaatcctacttttcattaggagttaattaccgtcagttcatcaaggggtaatgtagg 38839582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 49897873 - 49898030
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||| |||| ||||||||||   ||||||||| || ||||||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||    
T  49897873 ttcttacgattaattaccatttttagctcaagaacgtcgaacttcttcttctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatc 49897972  T
Q  190 atacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccac 246  Q
    ||| || ||||||||||||||||| | |  ||||| ||| |||||||||| |||||||    
T  49897973 ataattgtcattagaggtaaattaccactgattcaacaaagggtaatgtacgccccac 49898030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 3232131 - 3232273
Alignment:
Q  90 ttcttacaattagttaccattttcctc-tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    ||||||||||||||||||||||||  | ||||||||||| | ||||||||||| ||||||||||||||| |||||| |||| ||  ||| || |||||||    
T  3232131 ttcttacaattagttaccattttcaacctcaagaacatcca-cttcttcatcttcttcattcaacatgtaatctccatctctttacttctagtatcgaat 3232229  T
Q  189 catacttatcattagaggtaaattaaccc-aattcatcaagggg 231  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||    
T  3232230 catacttatcattagaggtaaattgcccctaattcatcaagggg 3232273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 52432590 - 52432786
Alignment:
Q  16 ttttctacattacctctagatgaatt-ggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 114  Q
    ||||||||||||||||| |||||||| || ||||||| ||  ||||||| || ||  |  | || |||||||||||||||| ||| | |||||||||||     
T  52432590 ttttctacattacctcttgatgaatttggggtaatttaccattatcaaataataaaatcatatt-ttcatctttattcttataatcaattaccattttca 52432688  T
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 213  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||| ||| ||| |||| | |||||||| ||| ||| ||| || |||||||||    
T  52432689 tctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatcgaattatatttaccatcag-ggtaaatta 52432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 68100 - 68208
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| ||||||||||||  | ||||||||||| ||||||||||||||||||||| |||||||||||||| |||  ||||||||| ||||||||     
T  68100 ttcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatctttttcgttccaaaatcgaatg 68199  T
Q  190 atacttatc 198  Q
    ||| |||||    
T  68200 atatttatc 68208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 263
Target Start/End: Complemental strand, 34601715 - 34601509
Alignment:
Q  56 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    |||| |||||||||| |  |||||||||||||||||||||| ||||||||  |||||| |||||| |||||||||| | ||||||| ||| |||||||||    
T  34601715 ctataaaagaaaaatctcattttcttcatctttattcttacgattagttattattttcatctcaaaaacatcaaacgttttcatctactt-attcaacat 34601617  T
Q  156 gtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtaggccccacggatagag 254  Q
    ||||| | | |||| ||| ||  | |||||||||||| || |||||||||  |||||| | | |||| |||||||||| ||||||| | ||| ||||  |    
T  34601616 gtgatattcatctccttccttataaaatcgaatcatagttgtcattagagacaaattacctctaatttatcaaggggt-atgtaggtctcactgataagg 34601518  T
Q  255 ttttttcct 263  Q
    |||||||||    
T  34601517 ttttttcct 34601509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 3367810 - 3367908
Alignment:
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 213  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||   |||||| ||||||||| | ||||||||    
T  3367810 tctcaagaacatcaaattttttcatctcattcattcaacatgtgatctccatctctttcgttccagaattatatcatatttatcattaaaagtaaatta 3367908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 5500878 - 5500739
Alignment:
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcat 200  Q
    ||||||||||||  |||||| ||||||||| |||||||| || || |||||||||||||||||| ||| ||||||| ||||||| ||| ||||  || ||    
T  5500878 agttaccatttttatctcaaaaacatcaaatttcttcatttcatt-attcaacatgtgatctccatcttattcgtttcagaatcaaataatacagattat 5500780  T
Q  201 tagaggtaaattaac-ccaattcatcaaggggtaatgtagg 240  Q
    ||||| ||||||| |  |||||||||||| |||||||||||    
T  5500779 tagagataaattatcttcaattcatcaagaggtaatgtagg 5500739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 46080974 - 46081048
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    |||||||||| | ||||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||    
T  46080974 ttcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttcactcaacatgtaatctcc 46081048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 7104295 - 7104387
Alignment:
Q  117 tcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaa 209  Q
    ||||||| || ||| |||||||||||||||||||||||||| || | | |||| |||||| |||||||||||||||||| |||||||| ||||    
T  7104295 tcaagaatattaaatttcttcatctccttcattcaacatgtaatattcatctctttcgtttcagaatcgaatcatacttgtcattagaagtaa 7104387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 52432836 - 52432951
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||| | |||||||| |||||| || |   |||| |||||| || |||| ||||    
T  52432836 ttcttacaattagttatcattttcttctcaaaaacatcaaacttcttcattttcttcattcgacatgtaatttttatctctttcgtttcataatcaaatc 52432935  T
Q  190 atacttatcattagag 205  Q
    ||| || |||||||||    
T  52432936 atatttgtcattagag 52432951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 67967 - 68065
Alignment:
Q  128 aaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatca 226  Q
    |||||||||||| |||||||||| ||||||||||| | |||| ||| ||||| ||||| |||||| || ||||||||||||||||| | || |||||||    
T  67967 aaacttcttcatatccttcattctacatgtgatcttcatctctttcattccaaaatcggatcataattgtcattagaggtaaattaccacatttcatca 68065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 3231946 - 3232031
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    |||||||||| |||||  ||||||| |||| | |||||| ||||||||||| ||||||||||||| || |||||||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgat 3232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 15321029 - 15321156
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 174  Q
    ||||||||||||| ||| ||||||  ||||  ||||||| |||||| ||||| ||| || ||||| ||||||||||||||||| |||| | |||| |||     
T  15321029 ttttcttcatcttaattattacaacgagttgtcattttcttctcaaaaacattaaattttttcatatccttcattcaacatgtaatcttcatctctttca 15321128  T
Q  175 ttccagaatcgaatcatacttatcatta 202  Q
    || ||||||| ||||||| || ||||||    
T  15321129 tttcagaatcaaatcataattgtcatta 15321156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 41148651 - 41148568
Alignment:
Q  147 attcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggg 230  Q
    |||||||||||||| ||| |||| ||||||| ||||||||||  ||||| ||||||| | ||||||| ||||||||||||||||    
T  41148651 attcaacatgtgatatccatctccttcgttctagaatcgaattctacttttcattagggataaattaccccaattcatcaaggg 41148568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 2534503 - 2534433
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctcctt 145  Q
    ||||||||||||||||| ||| ||| | |||||| |||| |||||| ||||||||||||||||||||||||    
T  2534503 ttttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatctcctt 2534433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 34601484 - 34601366
Alignment:
Q  119 aagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-cc 217  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||| |||   || ||| |  ||| ||||||| || |||| |||||||||||| | ||    
T  34601484 aagaacatcaaacttcctcatctcctttattcaacatgtgatttccatcttcatcattctatgatcaaatcataattgtcataagaggtaaattaccacc 34601385  T
Q  218 aattcatcaaggggtaatg 236  Q
    ||||||| |||||||||||    
T  34601384 aattcattaaggggtaatg 34601366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 44330466 - 44330578
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||  | ||||||||||| | |||| ||||||| |||||||||| ||| | |||| ||||||||||||  |||||||  ||| ||||| |||||    
T  44330466 ttcttacaaccatttaccattttcatatcaaaaacatcacacttcttcatttccattattctacatgtgatctctatctcatttattcaagaattgaatc 44330565  T
Q  190 atacttatcatta 202  Q
    |||||||| ||||    
T  44330566 atacttattatta 44330578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 45136833 - 45136757
Alignment:
Q  47 aatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaa 123  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||||||||| |||||  |||||| || ||||||    
T  45136833 aatttacccctatcaaagaaaaatctcattttcttcatctttattcttacaatcagttattattttcatcgcaagaa 45136757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 24874601 - 24874715
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttctt-catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    |||||||||| | ||||||||||| | | ||||| ||||||||| || ||||||| | |||||||||||||||||  ||| |||| ||| ||||||||||    
T  24874601 ttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaat 24874700  T
Q  189 catacttatcattag 203  Q
      ||||| |||||||    
T  24874701 gctacttgtcattag 24874715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 10775166 - 10775231
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    |||||| ||| | ||||||||||| ||| |||||||||||||||||||||||| ||| ||||||||    
T  10775166 ttcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacat 10775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 35956982 - 35957083
Alignment:
Q  86 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcg 185  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||| | ||| || || ||| || ||||||||||| |||  ||||||| | |||||    
T  35956982 tttattcttacaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatctatttcgttcaaaaatcg 35957081  T
Q  186 aa 187  Q
    ||    
T  35957082 aa 35957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 42819471 - 42819524
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 112  Q
    ||||||||||||  |||||||||||| |||||||||| ||||||||||||||||    
T  42819471 tcaaagaaaaatcctcttttcttcatatttattcttaaaattagttaccatttt 42819524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 10775037 - 10775125
Alignment:
Q  107 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 195  Q
    ||||||| |||| ||||||||||| |||||| |||  ||||||||||||||||||| | | |  ||||||||| ||||||||| |||||    
T  10775037 cattttcatctccagaacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcgttccataatcgaatcctactt 10775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 12145005 - 12145093
Alignment:
Q  125 atcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 213  Q
    |||||||||||||||||| ||||||||||||||||| | | ||||  ||  || | |||| |||| ||||||||| |||||||||||||    
T  12145005 atcaaacttcttcatctcattcattcaacatgtgattttcatctctgtcactctaaaatcaaatcctacttatcaatagaggtaaatta 12145093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 24873768 - 24873867
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttctt-catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    |||||||||| | ||||||||||| | | ||||| ||||||||| || ||||||| | |||||||||||||||||  ||| |||| ||| ||||||||||    
T  24873768 ttcttacaatcaattaccattttcattttaagaagatcaaacttttttcatctccataattcaacatgtgatctctgtcttattcattctagaatcgaat 24873867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 42819624 - 42819702
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttct 168  Q
    |||||||||| | ||| ||||||| |||||||||||| |||||| ||||||   ||| |||||||| ||||||||||||    
T  42819624 ttcttacaatcaattatcattttcatctcaagaacataaaacttattcatcattttctttcaacatatgatctccttct 42819702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 46080821 - 46080910
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcatt 149  Q
    |||||||||||| |  |||||||||| |||||||| | |||   ||||||||||  ||| |||||||||||| ||||||||||| ||||||    
T  46080821 tcaaagaaaaatctcattttcttcatttttattctcagaatcgattaccatttttatcttaagaacatcaaa-ttcttcatctctttcatt 46080910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 7749024 - 7749085
Alignment:
Q  108 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 169  Q
    |||||| |||||||||||||||| |||||||| | |||  || |||||||||||||| ||||    
T  7749024 attttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctc 7749085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 3367746 - 3367794
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaa 123  Q
    |||||||||||||||||||||| || ||||| | ||||| |||||||||    
T  3367746 ttttcttcatctttattcttacgatcagttatcgttttcatctcaagaa 3367794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 7104215 - 7104271
Alignment:
Q  132 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaat 188  Q
    ||||||||||||||||| |||||||| || | | |||| |||||| |||||||||||    
T  7104215 ttcttcatctccttcatgcaacatgtaatattcatctctttcgtttcagaatcgaat 7104271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 32047190 - 32047325
Alignment:
Q  103 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcatta 202  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| | | |||  ||| ||||| ||| ||||| ||||||||||||    
T  32047190 ttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcatta 32047289  T
Q  203 gaggtaaattaacc-caattcatcaaggggtaatgt 237  Q
    ||||||||||| || |||||||||||||| ||||||    
T  32047290 gaggtaaattatcctcaattcatcaagggataatgt 32047325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 32342603 - 32342753
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| | ||| ||||||| |||||| |||||||||||| |||||||| ||||||||||||| ||||||  | |  |||||||||||||| ||||    
T  32342603 ttcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacatgcgatctctatttttttcgttccagaatcaaatc 32342702  T
Q  190 atacttatcattagaggtaaattaacccaattcatcaaggggtaatgtagg 240  Q
    ||| |||||||||  | ||||||| |||||||||| || ||| ||||||||    
T  32342703 atatttatcattaaggataaattaccccaattcataaaagggcaatgtagg 32342753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 20067904 - 20068042
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 174  Q
    |||||||||| |||||||||| ||| ||||| ||||||| |||||| ||||| | |||||||| ||  |||| ||||||||||||||| |  ||||||||    
T  20067904 ttttcttcatttttattcttagaatcagttatcattttcatctcaataacattatacttcttcttcatcttccttcaacatgtgatcttcccctcattcg 20068003  T
Q  175 ttccagaatcgaatcatacttatcattagaggtaaatta 213  Q
    ||||| ||||||||| ||||| || |||  |||||||||    
T  20068004 ttccataatcgaatcctacttgtctttaagggtaaatta 20068042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 32047039 - 32047144
Alignment:
Q  136 tcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaattcatcaaggggtaa 234  Q
    |||||| |||||||||||||||||||||||| |  ||||||||||||| ||||| || || ||| |||| |||||||| |  |||||||||||| |||||    
T  32047039 tcatcttcttcattcaacatgtgatctcctttttcttcgttccagaattgaatcctatttgtcaatagaagtaaattaccatcaattcatcaagaggtaa 32047138  T
Q  235 tgtagg 240  Q
    ||||||    
T  32047139 tgtagg 32047144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 20068089 - 20068239
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| ||| ||||||||| | |  ||||||||||||||| ||||||| |||||||||||||| ||||   |||  |||  | ||||||  ||||    
T  20068089 ttcttacaatcagt-accattttcatgtagagaacatcaaacttcctcatctctttcattcaacatgtcatctttatcttcttcagttcagaataaaatc 20068187  T
Q  190 atacttatcattagaggtaaattaac-ccaattcatcaaggggtaatgtagg 240  Q
     |||||||||||| ||||||| || | |||||||||| || |||||||||||    
T  20068188 ttacttatcattaaaggtaaaatatcaccaattcatcgagaggtaatgtagg 20068239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 23577165 - 23577224
Alignment:
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    ||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||| ||||    
T  23577165 agttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 7556171 - 7556040
Alignment:
Q  107 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgtt-ccagaatcgaatcatacttatcattagag 205  Q
    ||||||| |||||||||||| ||| || ||||| || ||||||||||||||||||| | | || ||||||  || |||||||||||| || | ||||| |    
T  7556171 cattttcatctcaagaacattaaatttattcatatcattcattcaacatgtgatcttcctatctttcgttatcataatcgaatcatagttgttattaggg 7556072  T
Q  206 gtaaattaacc-caattcatcaaggggtaatg 236  Q
     ||||||| || ||||||||||| || |||||    
T  7556071 ataaattaccctcaattcatcaatggataatg 7556040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 20206541 - 20206481
Alignment:
Q  76 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 136  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  20206541 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 20206481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 22100564 - 22100504
Alignment:
Q  76 tttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttctt 136  Q
    ||||||| | |||||||||||||| | ||| ||||||| |||||| |||||||||||||||    
T  22100564 tttcttcttatttattcttacaatcaattatcattttcatctcaataacatcaaacttctt 22100504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 26236799 - 26236690
Alignment:
Q  179 agaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttacc 277  Q
    ||||||||||||||||||| |||||||||||||||  ||||||| ||||  || ||||| | |||  |  |||| |||||||| |||||||| | |||||    
T  26236799 agaatcgaatcatacttattattagaggtaaattacccccaatttatcattggataatgcatgccttattgata-agtttttt-cttataatgagttacc 26236702  T
Q  278 attttcatctca 289  Q
    ||||||||||||    
T  26236701 attttcatctca 26236690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 32046954 - 32047010
Alignment:
Q  56 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccatttt 112  Q
    |||||||||||||||| | ||||||  ||||||||||||||||| | ||| ||||||    
T  32046954 ctatcaaagaaaaattctattttctctatctttattcttacaatcaattatcatttt 32047010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 29969101 - 29969252
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| ||||||||||||  | ||||||||||||||||||||| || ||||||||||||||||||| | | |||| ||||||||| ||||||||     
T  29969101 ttcttacaatcagttaccattttttt-tcaagaacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaatt 29969199  T
Q  190 atacttatcatt-agaggtaaattaacc-caattcatcaaggggtaatgtagg 240  Q
     ||||| ||||| || ||||||||| || ||||||||||||||||||||||||    
T  29969200 ctacttgtcattaaggggtaaattatccacaattcatcaaggggtaatgtagg 29969252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 246
Target Start/End: Complemental strand, 7405661 - 7405477
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 158  Q
    |||||||||||||   ||| ||| ||||||||||||| ||||||||   |||||  | ||||| ||||||||| |||||||||||| |||||||||||||    
T  7405661 tcaaagaaaaattccatttactttatctttattcttaaaattagttgttatttttatgtcaagcacatcaaacgtcttcatctcctacattcaacatgtg 7405562  T
Q  159 atctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtaggccccac 246  Q
    |||| | |||| ||||||||| |||||| |    ||||| ||||| |||||||||  ||||| |||||||||||||||||| |||||||    
T  7405561 atcttcatctcgttcgttccataatcgagt----cttatgattaggggtaaattatccccaactcatcaaggggtaatgtatgccccac 7405477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 34695801 - 34695904
Alignment:
Q  59 tcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtg 158  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | |||| |  |||||| ||||||| |||||||||||||||||||    
T  34695801 tcaaagaaaaattctcttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttcacctccttcattcaacatgtg 34695900  T
Q  159 atct 162  Q
    ||||    
T  34695901 atct 34695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 35574712 - 35574610
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||||||||||||| |||||| ||| |||||||||||| || |||||||| |||||||||||||| |||||| |||  ||||||||| |||||||||    
T  35574712 ttcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatctttttcgttccaaaatcgaatc 35574613  T
Q  190 ata 192  Q
    |||    
T  35574612 ata 35574610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 37010445 - 37010315
Alignment:
Q  62 aagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatc 161  Q
    |||||||| ||  |||| |||||||||||| | | ||||||||||||||||| |||||| |||||||||||| ||||| || |||||| |||||||||||    
T  37010445 aagaaaaaattcatttttttcatctttattttaaaaattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatc 37010346  T
Q  162 tccttctcattcgttccagaatcgaatcata 192  Q
    ||  |||| ||| ||||| ||||||||||||    
T  37010345 tctatctccttcattccataatcgaatcata 37010315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 197
Target Start/End: Complemental strand, 7590442 - 7590280
Alignment:
Q  35 atgaattggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttc 134  Q
    ||||||||  ||||||| ||||||| | ||||||| |   |||||||| ||||||||||||||||  ||||||| |||| | |||||||||||||| |||    
T  7590442 atgaattgaggtaatttacccctattatagaaaaactcatttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttc 7590343  T
Q  135 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttat 197  Q
    ||||||| |||||||||  ||||| ||| | |||  |||||| |||||||| ||| |||||||    
T  7590342 ttcatcttcttcattcactatgtggtcttcatcttcttcgtttcagaatcgtatcttacttat 7590280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 177
Target Start/End: Complemental strand, 6630628 - 6630524
Alignment:
Q  73 tcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 172  Q
    |||||||||| |||||||||||  ||| | ||||||||||| ||| |||| ||| ||| |||||||||||||||||| |||| ||||||||| |||||||    
T  6630628 tcttttcttcgtctttattcttcaaatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcatt 6630529  T
Q  173 cgttc 177  Q
    |||||    
T  6630528 cgttc 6630524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 32166707 - 32166593
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| | |||| ||||||  ||||| |||||    
T  32166707 ttcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatc 32166608  T
Q  190 atacttatcattaga 204  Q
     |  |||||||||||    
T  32166607 ttttttatcattaga 32166593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  92 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 169  Q
    |||||||||||||||||||| | ||| || ||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 29093581 - 29093644
Alignment:
Q  132 ttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatactt 195  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatactt 29093644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 32166825 - 32166735
Alignment:
Q  138 atctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaa 227  Q
    |||| ||||||| |||||||||| | | |||| ||||||||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  32166825 atcttcttcatttaacatgtgatttacatctctttcgttccaaaatcgaatcgtacttgtcattagaggtaaattacacccaattcatcaa 32166735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 6630429 - 6630308
Alignment:
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 213  Q
    ||||||||||||||||||| |||||||  ||||||||||||||| | ||| |||| ||| || || |||| |||| ||||| ||||||| |||||||||     
T  6630429 tctcaagaacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattac 6630330  T
Q  214 acccaattcatcaaggggtaat 235  Q
     | ||||||||||| |||||||    
T  6630329 tctcaattcatcaaagggtaat 6630308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 39280912 - 39280984
Alignment:
Q  46 taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctc 118  Q
    |||||| ||||||||||||||||||   |||||||||||||||||||||| ||| ||||||||||||| ||||    
T  39280912 taatttacccctatcaaagaaaaatccccttttcttcatctttattcttaaaatcagttaccattttcatctc 39280984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 12782311 - 12782527
Alignment:
Q  16 ttttctacattacctctagatgaat-tggcgtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 114  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||  |||||||||||| |  |||||| |||||||||||||||||||| | |||| ||||||     
T  12782311 ttttctacattacctcttgatgaatgtggagtaatttacca-tatcaaagaaaagtcctctttt-ttcatctttattcttacaatcaattactattttca 12782408  T
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaa 214  Q
     ||||     | ||||||| | ||| || |||||||||  |||| | ||| |||| | |||| |||||||||||  ||||| ||||||||||||| |||     
T  12782409 actca-----aacaaacttatacatttctttcattcaatgtgtgttatccatctcctacgtttcagaatcgaattctacttgtcattagaggtaatttat 12782503  T
Q  215 cc-caattcatcaaggggtaatgt 237  Q
    || ||||||||  |||||||||||    
T  12782504 cctcaattcattgaggggtaatgt 12782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 6803989 - 6803868
Alignment:
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta- 213  Q
    |||||| ||||||||||||||| ||||  |||||||| |||||| | ||| |||| ||| || || |||| |||| ||||| ||||||| |||||||||     
T  6803989 tctcaaaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaattac 6803890  T
Q  214 acccaattcatcaaggggtaat 235  Q
     ||||||||||||| |||||||    
T  6803889 tcccaattcatcaaagggtaat 6803868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 35574884 - 35574743
Alignment:
Q  87 ttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcga 186  Q
    ||||| ||||||  |||||| |||||| |||||||||||| ||  || ||||| || |||||| ||||| |||| |   |||| ||||||||| ||||||    
T  35574884 ttattattacaacgagttactattttcatctcaagaacattaatttttttcatatctttcattgaacatatgattttaatctctttcgttccaaaatcga 35574785  T
Q  187 atcatacttatcattagaggtaaattaacc-caattcatcaa 227  Q
    |||||| || ||||||| ||||||||| || |||||||||||    
T  35574784 atcatagttgtcattagcggtaaattaccctcaattcatcaa 35574743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 30547409 - 30547336
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcat 148  Q
    |||||||||| ||||||||| ||| || |||| |||||  |||||| |||| ||||||||||||||||||||||    
T  30547409 ttttcttcatttttattcttccaaatatttactatttttatctcaaaaacaacaaacttcttcatctccttcat 30547336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 31475009 - 31475111
Alignment:
Q  56 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    |||||||||||||||  | |||||||| |||| ||| ||  ||| |||||| |||||  ||||||||||||||||||||||||||| ||| |||||  ||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttcttgattcacaat 31475106  T
Q  156 gtgat 160  Q
    |||||    
T  31475107 gtgat 31475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 33897753 - 33897807
Alignment:
Q  103 ttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 157  Q
    |||| |||||| |||||| ||||||||| ||||| || |||||||||||||||||    
T  33897753 ttactattttcatctcaaaaacatcaaaattcttaatttccttcattcaacatgt 33897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 26086801 - 26086876
Alignment:
Q  137 catctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta 213  Q
    ||||||||| ||||||||| ||||||   |||| ||||||||| ||| ||||| || || |||||||||||||||||    
T  26086801 catctcctttattcaacatatgatctttgtctctttcgttccataattgaatccta-ttgtcattagaggtaaatta 26086876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 90 - 239
Target Start/End: Original strand, 22050855 - 22051005
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||||||||| ||||||  ||| || ||||  ||  ||||||||||||||||||||||||||||||| | |||||||| || ||||||||||||    
T  22050855 ttcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcattcctttcagaatcgaatc 22050954  T
Q  190 atacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtag 239  Q
    ||| |||||||||  |||||||||  |||||||||| |||||||| |||||    
T  22050955 atatttatcattaagggtaaattacccccaattcataaaggggtattgtag 22051005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 289
Target Start/End: Original strand, 25062352 - 25062522
Alignment:
Q  120 agaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacc-ca 218  Q
    |||||||||||||||||||||| ||||||| |||||||||||| | |||| || |||||| |||| |||| ||||| | ||||| ||||||||| || ||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaattaccctca 25062451  T
Q  219 attcatcaaggggtaatgtaggccccacggatagagttttttccttataatcatttaccattttcatctca 289  Q
    |||||||||||  ||||||||||  |||  ||   ||||||| |||| ||||| ||||| |||||||||||    
T  25062452 attcatcaaggaataatgtaggcttcaccaatttggtttttttcttacaatcaattaccgttttcatctca 25062522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 15131647 - 15131574
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctc 163  Q
    ||||||| || ||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  15131647 ttcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatctc 15131574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 20512923 - 20512797
Alignment:
Q  66 aaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcct 165  Q
    |||||||  ||||||||||||||||| ||| ||| | ||  ||||||| ||| |  |||||||||||||||||||| ||||||| ||||||| ||||||     
T  20512923 aaaatttcattttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttcttcatttaacatgtaatctcca 20512824  T
Q  166 tctcattcgttccagaatcgaatcata 192  Q
    | || |||||| || ||||||||||||    
T  20512823 tatccttcgtttcataatcgaatcata 20512797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 25062493 - 25062616
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| | ||||| ||||| ||||||||| ||||||||||||||||| |||| |||||| ||| ||||  ||||  |||  |||||||| |||||    
T  25062493 ttcttacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttcttcgttcaacttgtaatctttttcttcttcaatccagaattgaatc 25062592  T
Q  190 atacttatcattagaggtaaatta 213  Q
    |||||| |||| ||  ||||||||    
T  25062593 atacttgtcatgagttgtaaatta 25062616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 22050725 - 22050774
Alignment:
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||||    
T  22050725 tctcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcc 22050774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 20512740 - 20512668
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatct 162  Q
    |||||||||||||||| | ||||| |||||| ||||| ||  |||||||| | ||||||| ||||||||||||    
T  20512740 ttcttacaattagttatctttttcatctcaaaaacattaagtttcttcatattcttcattgaacatgtgatct 20512668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 4115452 - 4115389
Alignment:
Q  93 ttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatg 156  Q
    |||| |||| ||||||||||  ||| |||||||| |||||||| |||||| |||||||||||||    
T  4115452 ttactattaattaccatttttatcttaagaacatgaaacttctccatctcattcattcaacatg 4115389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 25234261 - 25234202
Alignment:
Q  101 agttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    ||||||||||||| |||||||||||||||| ||||| || ||||||  |||| |||||||    
T  25234261 agttaccattttcatctcaagaacatcaaatttcttaatatccttccgtcaatatgtgat 25234202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 54000119 - 54000045
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    ||||||| || | ||||||||||| ||||||||||||||||    |||||| | || ||||||||||||||||||    
T  54000119 ttcttactatcaattaccattttcatctcaagaacatcaaaaaaattcatcacatttattcaacatgtgatctcc 54000045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 44592031 - 44591971
Alignment:
Q  79 cttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 139  Q
    ||||||| ||||| ||||||  |||||| |||||| |||||| ||||| ||||||||||||    
T  44592031 cttcatcattattattacaacaagttactattttcatctcaaaaacattaaacttcttcat 44591971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 39341202 - 39341347
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    ||||||| || ||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||| ||||||| | |  ||||||| | ||| |||||    
T  39341202 ttcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacatgagatctccatttacttcgttctaaaattgaatc 39341301  T
Q  190 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaa 234  Q
     || |||||||||||||||||||| ||| |||||||||| ||||||    
T  39341302 ttatttatcattagaggtaaattacccctaattcatcaaagggtaa 39341347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 282
Target Start/End: Original strand, 2562969 - 2563115
Alignment:
Q  135 ttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggtaa 234  Q
    |||||||| ||||||||||||||||||||  | ||||| ||| |||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||    
T  2562969 ttcatctctttcattcaacatgtgatctctatatcatttgtttcagaatcgaatcatacttatcatttg-ggtaaattacccatattcatcaaggggtaa 2563067  T
Q  235 tgtaggccccacggatagagttttttccttataatcatttaccatttt 282  Q
    |||||| | ||  ||||||| ||||| |||| || || ||| ||||||    
T  2563068 tgtaggtctcattgatagagattttttcttacaagcagttatcatttt 2563115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 240
Target Start/End: Original strand, 7938035 - 7938220
Alignment:
Q  56 ctatcaaagaaaaattttcttttcttcatctttattcttacaattagttacca--ttttcctctcaagaacatcaaacttcttcatctccttcattcaac 153  Q
    |||||||||||||||| | |||||||||||||||||||||| ||  ||| | |  ||||| |||||| ||||||||| || || ||||||||||||||||    
T  7938035 ctatcaaagaaaaattatattttcttcatctttattcttacgatccgttgctattttttcatctcaaaaacatcaaa-ttttttatctccttcattcaac 7938133  T
Q  154 atgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaatta-acccaattcatcaaggggtaatgtagg 240  Q
    ||| ||||||| | |  || | || ||||||||||| || |||||||||  ||||||||| || ||||||||||| ||||||||||||    
T  7938134 atgcgatctccgttttctttgctctagaatcgaatcttatttatcattaagggtaaattacacgcaattcatcaa-gggtaatgtagg 7938220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 54437809 - 54437961
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatc 189  Q
    |||||||||| ||||||||||||  |||||| |||||||||||||||||||| | ||||| |||| ||| | ||| |||  ||| ||  | |||| ||||    
T  54437809 ttcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaacacgtggtttccatctttttcattttaaaatcaaatc 54437908  T
Q  190 atacttatcattagaggtaaattaaccc-aattcatcaaggggtaatgtaggc 241  Q
    ||| |||||||||||||||||||| ||| |||||| |||||||||| ||||||    
T  54437909 atatttatcattagaggtaaattacccctaattcaacaaggggtaacgtaggc 54437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 13283927 - 13283806
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcg 174  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||||||| |||| ||| |||||||||| |||||||||| || | || |    
T  13283927 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaacttattcaactcattcattcaacgtgtgatctccatcacttttg 13283828  T
Q  175 ttccagaatcgaatcatactta 196  Q
    ||| ||||||||||| ||||||    
T  13283827 ttctagaatcgaatcctactta 13283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 54437604 - 54437733
Alignment:
Q  54 ccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaac 153  Q
    ||||||||||| ||||  |  ||||| ||||||||||| ||||||  | ||||||||||| |||||| ||||| |||||||||||| ||||||||| |||    
T  54437604 ccctatcaaaggaaaaactcattttcctcatctttattattacaacaaattaccattttcatctcaataacattaaacttcttcatatccttcatttaac 54437703  T
Q  154 atgtgatctccttctcattcgttccagaat 183  Q
    |||| | || | |||| |||||||||||||    
T  54437704 atgtaaacttcatctctttcgttccagaat 54437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 20519353 - 20519245
Alignment:
Q  105 accattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaga 204  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||||| |||||||||||||| |||| || |||||| |||  ||||  ||||||||||| |    
T  20519353 accattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttccaaaatttaatccaacttatcattata 20519254  T
Q  205 ggtaaatta 213  Q
    | |||||||    
T  20519253 gttaaatta 20519245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 45 - 139
Target Start/End: Original strand, 7641806 - 7641900
Alignment:
Q  45 gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcat 139  Q
    ||||||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| ||||| ||||||  | ||||||||||||||||| |||||    
T  7641806 gtaatttacccctatcaaagaaaattttcattttcttcaactttattcttaaaatcagttatcatttttatatcaagaacatcaaactttttcat 7641900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 48646411 - 48646526
Alignment:
Q  86 tttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcg 185  Q
    |||||||||| ||| | | ||||||||| ||| ||||||||||||||| ||||| | ||||||||||||| || ||||  ||||||||||| || |||||    
T  48646411 tttattcttataatcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacatatggtctctatctcattcgtttcataatcg 48646509  T
Q  186 aatcatacttatcatta 202  Q
    |||| | ||||||||||    
T  48646510 aatcctgcttatcatta 48646526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 34762222 - 34762089
Alignment:
Q  61 aaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    ||||||||||| | |||| || |||||||||||||||||| ||||| |||||  | | || ||||||||| || |||||||| ||||||||||| |||||    
T  34762222 aaagaaaaattctatttttttaatctttattcttacaattggttactatttta-tatgaaaaacatcaaatttattcatctcattcattcaacacgtgat 34762124  T
Q  161 ctccttctcattcgttccagaatcgaatcatactt 195  Q
    |||  |||| ||||||  |||||| || |||||||    
T  34762123 ctctatctctttcgttggagaatcaaaccatactt 34762089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 51260654 - 51260553
Alignment:
Q  133 tcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaacccaattcatcaaggggt 232  Q
    |||||||||| ||||||||||||||||| ||| | || ||| ||  ||||||||||| |||||||||| | |||||||| | |||||||||||||| |||    
T  51260654 tcttcatctcattcattcaacatgtgatttccatatctttcattttagaatcgaatcctacttatcatga-aggtaaatcaccccaattcatcaagaggt 51260556  T
Q  233 aat 235  Q
    |||    
T  51260555 aat 51260553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 46303299 - 46303447
Alignment:
Q  16 ttttctacattacctctagatgaattggc-gtaatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 114  Q
    ||||||||||||   || ||||||||||  ||||||| | |||||||||||||||| |  |||| |||||| || |||||||||| |  || ||||||      
T  46303299 ttttctacattattccttgatgaattgggagtaatttactcctatcaaagaaaaatctattttttttcatcatt-ttcttacaatcaaatatcattttta 46303397  T
Q  115 tctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctcc 164  Q
    |||  ||| |||||||||||||||||| ||| ||||||||||||||||||    
T  46303398 tctatagagcatcaaacttcttcatcttctttattcaacatgtgatctcc 46303447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 21570356 - 21570436
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacat 155  Q
    ||||||| ||||||||||||||||||  |||| |||||| || |||||||||||||||| |||||||  ||| ||||||||    
T  21570356 ttttctttatctttattcttacaattgattactattttcatcacaagaacatcaaactttttcatctaattcgttcaacat 21570436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  92 cttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgat 160  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||| |||||| ||||||||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 6138487 - 6138566
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaaca 154  Q
    |||||||||||||||||||| |||| | || | |||||| || |||||||||||| ||| |||| ||| |||||||||||    
T  6138487 ttttcttcatctttattctttcaatcaattgctattttcatcacaagaacatcaaccttattcaactcattcattcaaca 6138566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 20519556 - 20519434
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaa-----catcaaacttcttcatctccttcattcaacatgtgatctccttctc 169  Q
    |||||||||||||| |||||||||| ||||||||||||  | | || ||     |||||||||| ||||| | ||||||||||| |||||| ||| |||     
T  20519556 ttttcttcatctttcttcttacaatcagttaccattttaatataaaaaaaaaaacatcaaactttttcattttcttcattcaacgtgtgatatccatctt 20519457  T
Q  170 attcgttccagaatcgaatcata 192  Q
     ||||||||| ||| ||||||||    
T  20519456 tttcgttccaaaattgaatcata 20519434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 45228378 - 45228277
Alignment:
Q  108 attttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggt 207  Q
    |||||| |||||||||||| |||||| |||||   || ||||||| ||||||| |||  |||||| |||||| |||||||| |||||||||| |||  ||    
T  45228378 attttcatctcaagaacattaaactttttcat---ctgcattcaatatgtgatatccaactcatttgttccaaaatcgaattatacttatcaataggtgt 45228282  T
Q  208 aaatt 212  Q
    |||||    
T  45228281 aaatt 45228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 34762025 - 34761943
Alignment:
Q  90 ttcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 172  Q
    ||||| |||| | ||| ||||||| |||| |||| ||||||| | || |||||||||| |||||||||||||| | |||||||    
T  34762025 ttctttcaatcaattatcattttcatctcgagaatatcaaacctttttatctccttcactcaacatgtgatcttcatctcatt 34761943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 37012 - 36907
Alignment:
Q  123 acatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattagaggtaaattaac-ccaatt 221  Q
    |||||||| ||||||||||| || |||||||||||||||| | ||||||| ||| || ||||||||| ||||||| ||||   |||||||| | ||||||    
T  37012 acatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaattacctccaatt 36913  T
Q  222 catcaa 227  Q
    ||||||    
T  36912 catcaa 36907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 772 - 853
Alignment:
Q  75 ttttcttcatctttattcttacaattagttaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgt 157  Q
    |||||||||| |||||| ||||| | | ||| ||||||||| ||||| | ||||||||||||||||||||| |||||||||||    
T  772 ttttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatctccttgattcaacatgt 853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 5582 - 5456
Alignment:
Q  16 ttttctacattacctctagatgaattggcg-taatttgcccctatcaaagaaaaattttcttttcttcatctttattcttacaattagttaccattttcc 114  Q
    |||||||||||||||||  | ||||||  | |||||| ||| ||||||| ||||||    |||||||||||||||| |||| ||| || ||| ||||||     
T  5582 ttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaattttca 5483  T
Q  115 tctcaagaacatcaaacttcttcatct 141  Q
    |||||| || |||||||||||||||||    
T  5482 tctcaaaaagatcaaacttcttcatct 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 5335 - 5298
Alignment:
Q  126 tcaaacttcttcatctccttcattcaacatgtgatctc 163  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  5335 tcaaacatctttatctccttcattcaacatgtgatctc 5298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University