View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_13 (Length: 515)
Name: NF20296_high_13
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 34842379 - 34841890
Alignment:
| Q |
18 |
aatatcagcccagacttcacgttgaataacagtcacagacatttcaagactccaatgtgaaaaagtcatgcataggaatgacaaactattaaggtaacat |
117 |
Q |
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| T |
34842379 |
aatatcaggccagacttcacgttgaatcacagtcacagacatttcaagactccaatgtgaaaaagtcgtgcataggaatgacaaactattaaggtaacat |
34842280 |
T |
|
| Q |
118 |
aatccaatagcagatataagaaacaacaatgcaagccaacatacagaaacaaatagatgggtgcagagatctactttaaaccatgtactaaatttccact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842279 |
aatccaatagcagatataagaaacaacaatgcaagccaacatacagaaacaaatagatgggtgcagagatctactttaaaccatgtactaaatttccact |
34842180 |
T |
|
| Q |
218 |
acccttcgctctgttgtccaaattgggatctccattctctccacatccagctcgatactaaaatccctcaaaacaagctaattacaaaggatagaggaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842179 |
acccttcgctctgttgtccaaattgggatctccattctctccacatccagctcgatactaaaatccctcaaaacaagctaattacaaaggatagaggaat |
34842080 |
T |
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| Q |
318 |
actactaaacacacttatgcatcatataccatattgcataagcaagaacaatcattttagtaatattttttattcataagcatgatcttgctcctcttcc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34842079 |
actactaaacacacttatgcatcatataccatattgcataagcaagaacaatcattttagtaatatcttttattcataagcatgatcttgctcctcttcc |
34841980 |
T |
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| Q |
418 |
tcctcatcatcatattctccttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctctgct |
507 |
Q |
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| T |
34841979 |
tcctcgtcatcatattctccttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctctgct |
34841890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 507
Target Start/End: Original strand, 45452346 - 45452414
Alignment:
| Q |
439 |
tcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctctgct |
507 |
Q |
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| T |
45452346 |
tcttcatctgcagtagcatcttggtattgctggtactctgagacaaggtcattcatgttgctttctgct |
45452414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 11731782 - 11731848
Alignment:
| Q |
437 |
cttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
503 |
Q |
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| T |
11731782 |
cttcttcgtcagcagttgcatcctggtattgctggtactcagcaacaagatcattcatgttactctc |
11731848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 503
Target Start/End: Original strand, 38176926 - 38176992
Alignment:
| Q |
437 |
cttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
503 |
Q |
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|||| ||||||||||| ||||||||||| ||||||||||| | ||| | ||||||||||| ||||| |
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| T |
38176926 |
cttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcatgttactctc |
38176992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 503
Target Start/End: Complemental strand, 5532886 - 5532825
Alignment:
| Q |
442 |
tcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
503 |
Q |
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|||||||| |||||||| |||||||| || ||||||| || || ||||||||||||||||| |
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| T |
5532886 |
tcatcagcggtggcatcttggtactgttgatactcagcaaccagatcattcatgttgctctc |
5532825 |
T |
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