View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_14 (Length: 467)
Name: NF20296_high_14
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 38182841 - 38183279
Alignment:
| Q |
19 |
ttacttcctcaccttttgctaacaatgaaataatcaactcttttccaaaaattccaagtatgtgtcatatgcaatccatgttagaaactcaattaagtgg |
118 |
Q |
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| T |
38182841 |
ttacttcctcaccttttgctaacaatgaaataatcaactcttttccaaaaatgccaagtatgtgtcatatgcaagccatgttagaaactcaattaagtgg |
38182940 |
T |
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| Q |
119 |
caacaaggttccatcctggagctttcttgagtttctcttctttcatcatctttctcagtctcaaaactttgggccattgtctagcctctgcgtacatatt |
218 |
Q |
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| T |
38182941 |
caacaaggttccatcctggagctttcttgagtttctcttctttcatcatctttctcagtctcaaaactttgggccattgtctagcctatgcgtacatatt |
38183040 |
T |
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| Q |
219 |
tgacaaagcaacatgagctccatgattatgtggttccagagcaagaatttctttcgctactctttcagccaactcggtgttgccattattcttgctagat |
318 |
Q |
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| T |
38183041 |
tgacaaagcaacatgagctccatgattatgtggttccagagcaagaatttctttcgctactctttcagccaactcagtgttgccattattcttgctagat |
38183140 |
T |
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| Q |
319 |
gccagcaaagatcccaaaataacaaccacgtctggtttccatggcatcccttttataagttcctctgcctctaccaagatggtcaaccatgcagccataa |
418 |
Q |
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| T |
38183141 |
gccagcaaagatcccaaaataacaaccacgcctggtttccatggcatcccttttataagttcctctgcctctcccaagatggtcgaccatgcagccataa |
38183240 |
T |
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| Q |
419 |
tgctcaatcttcggttcgataccatacacaaccttcatc |
457 |
Q |
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| T |
38183241 |
tgctcaatcttcggttcgataccatacacaaccttcatc |
38183279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 94 - 391
Target Start/End: Original strand, 12010871 - 12011165
Alignment:
| Q |
94 |
ccatgttagaaactcaattaagtggcaacaaggttccatcctggagctttcttgagtttctcttctttcatcatctttctcagtctcaaaactttgggcc |
193 |
Q |
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| T |
12010871 |
ccatgttagaaatgcaattaagtggtaacaaggctccaccccggagctttcttgagtttctcttctttcatcatcttcctcaatctcgaaacctcctgcc |
12010970 |
T |
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| Q |
194 |
attgtctagcctctgcgtacatatttgacaaagcaacatgagctccatgattatgtggttccagagcaagaatttctttcgctactctttcagccaactc |
293 |
Q |
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| T |
12010971 |
attgtccagcctctgcgtacatattcgacaaagaaacatgaacaccatgattatgaggatccagagtaagaatttgtttcacaaccctttcagcaacctc |
12011070 |
T |
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| Q |
294 |
ggtgttgccattattcttgctagatgccagcaaagatcccaaaataacaaccacgtctggtttccatggcatcccttttataagttcctctgcctcta |
391 |
Q |
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| T |
12011071 |
ggtgtttccattattcttgctagctgccaataaagctcccaaaat---aaccacgtcaggtttccatggcatcccttttatcacttcctctgcctcta |
12011165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 12011183 - 12011248
Alignment:
| Q |
392 |
ccaagatggtcaaccatgcagccataatgctcaatcttcggttcgataccatacacaaccttcatc |
457 |
Q |
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| T |
12011183 |
ccaagaagatcaaccatgcacccataatgctcaatcgtcggctcaattccatgcacaaccttcatc |
12011248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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