View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_17 (Length: 447)
Name: NF20296_high_17
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19935155 - 19934904
Alignment:
| Q |
1 |
acagatcataatcgaagggcaaaactataattaacaaagtttattnnnnnnntaaatcaactataatattcttaccaattctgcacgcagaagctgagac |
100 |
Q |
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| T |
19935155 |
acagatcataatcgaagggcaaaactataattaacaaagtttattaaaaaaa-aaattaaccataatattcttaccaattctgcacgcagaagttgagac |
19935057 |
T |
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| Q |
101 |
tttgccctgcaaagtaatgtgagaaaaagcgccaaagaatgggacgatttagtaatgtttgctgtgattaacttcggtaagcttggaaacttttgtcgta |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19935056 |
tttgccctgcaaagtaatgcgagaaaaagcgccaaagaatgggacgatttagtaatgtttgctgtgattaacttcggtaagcttggaaacttttgtcgta |
19934957 |
T |
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| Q |
201 |
caaaattcagtgaaacaagccattccttgtttctgacaattaaacgttcagca |
253 |
Q |
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| T |
19934956 |
caaaattcagtgaaacaagccattccttgtttctgacaattaaactttcagca |
19934904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 19966294 - 19966043
Alignment:
| Q |
1 |
acagatcataatcgaagggcaaaactataattaacaaagtttattnnnnnnntaaatcaactataatattcttaccaattctgcacgcagaagctgagac |
100 |
Q |
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| T |
19966294 |
acagatcataatcgaagggcaaaactataattaacaaagtttattaaaaaaa-aaattaaccataatattcttaccaattctgcacgcagaagttgagac |
19966196 |
T |
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| Q |
101 |
tttgccctgcaaagtaatgtgagaaaaagcgccaaagaatgggacgatttagtaatgtttgctgtgattaacttcggtaagcttggaaacttttgtcgta |
200 |
Q |
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| T |
19966195 |
tttgccctgcaaagtaatgcgagaaaaagcgccaaagaatgggacgatttagtaatgtttgctgtgattaacttcggtaagcttggaaacttttgtcgta |
19966096 |
T |
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| Q |
201 |
caaaattcagtgaaacaagccattccttgtttctgacaattaaacgttcagca |
253 |
Q |
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| T |
19966095 |
caaaattcagtgaaacaagccattccttgtttctgacaattaaactttcagca |
19966043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 247 - 431
Target Start/End: Complemental strand, 19934856 - 19934674
Alignment:
| Q |
247 |
ttcagcacgttccaaaagtacaccaaaaaagtgaagttctttgaggagaggaaaatccacaaccagttgagaaaggtctttcactgtaatccattgcaaa |
346 |
Q |
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| T |
19934856 |
ttcagcacgttccaaaagtacaccaaacaagtgaagttttt--aggagaggaaaatccacaaccagttgagaaaggtctttcactgtaatccattgcaaa |
19934759 |
T |
|
| Q |
347 |
tgaagaacaacgagggtcctacagctgaaaacgctacgaggtaatgttatactgccggacagttcaagattgaggttctcgattc |
431 |
Q |
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| T |
19934758 |
tgaagaacaacgagggtcctacagctgaaaacgctacgaggtaatgttatactgccggacagttcaagattgaggttctcgattc |
19934674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 247 - 431
Target Start/End: Complemental strand, 19965995 - 19965813
Alignment:
| Q |
247 |
ttcagcacgttccaaaagtacaccaaaaaagtgaagttctttgaggagaggaaaatccacaaccagttgagaaaggtctttcactgtaatccattgcaaa |
346 |
Q |
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| T |
19965995 |
ttcagcacgttccaaaagtacaccaaacaagtgaagttttt--aggagaggaaaatccacaaccagttgagaaaggtctttcactgtaatccattgcaaa |
19965898 |
T |
|
| Q |
347 |
tgaagaacaacgagggtcctacagctgaaaacgctacgaggtaatgttatactgccggacagttcaagattgaggttctcgattc |
431 |
Q |
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| T |
19965897 |
tgaagaacaacgagggtcctacagctgaaaacgctacgaggtaatgttatactgccggacagttcaagattgaggttctcgattc |
19965813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 286 - 431
Target Start/End: Complemental strand, 19928587 - 19928442
Alignment:
| Q |
286 |
tttgaggagaggaaaatccacaaccagttgagaaaggtctttcactgtaatccattgcaaatgaagaacaacgagggtcctacagctgaaaacgctacga |
385 |
Q |
| |
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|||||| ||||| ||||| |||||| ||||||| ||| |||||| ||| || || |||||||||| ||| ||||||||||| ||||||| ||||||| |
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| T |
19928587 |
tttgagcagagggaaatctacaaccccgtgagaaatgtcattcactttaagccctttcaaatgaagagaaacaagggtcctacaactgaaaatgctacga |
19928488 |
T |
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| Q |
386 |
ggtaatgttatactgccggacagttcaagattgaggttctcgattc |
431 |
Q |
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| T |
19928487 |
ggtaatgttaccctgccaggcatttcaagattgaggtcctcgattc |
19928442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 47606269 - 47606346
Alignment:
| Q |
314 |
tgagaaaggtctttcactgtaatccattgcaaatgaagaacaacgagggtcctacagctgaaaacgctacgaggtaat |
391 |
Q |
| |
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||||||||||| |||||| | | || || |||||||||||||| ||||| ||||| || |||| ||||||||||||| |
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| T |
47606269 |
tgagaaaggtcattcacttttagccctttcaaatgaagaacaataagggttctacaactaaaaatgctacgaggtaat |
47606346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 4288802 - 4288847
Alignment:
| Q |
286 |
tttgaggagaggaaaatccacaaccagttgagaaaggtctttcact |
331 |
Q |
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| T |
4288802 |
tttgaggagaggaaaattcacaaccacttgagaaagatcattcact |
4288847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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