View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_high_20 (Length: 418)

Name: NF20296_high_20
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_high_20
NF20296_high_20
[»] chr8 (3 HSPs)
chr8 (18-372)||(43654317-43654671)
chr8 (271-410)||(43658909-43659052)
chr8 (281-410)||(38640642-38640775)
[»] chr2 (3 HSPs)
chr2 (34-402)||(8363309-8363681)
chr2 (282-363)||(8365589-8365670)
chr2 (237-281)||(14636371-14636415)
[»] chr1 (3 HSPs)
chr1 (245-410)||(47323268-47323434)
chr1 (275-410)||(13016342-13016481)
chr1 (274-373)||(47326883-47326982)
[»] chr4 (4 HSPs)
chr4 (249-410)||(6799126-6799291)
chr4 (283-351)||(42528323-42528391)
chr4 (247-316)||(8996039-8996108)
chr4 (275-387)||(8986594-8986712)
[»] chr7 (3 HSPs)
chr7 (254-410)||(41455343-41455503)
chr7 (283-370)||(32355283-32355370)
chr7 (283-410)||(41451688-41451820)
[»] scaffold0067 (1 HSPs)
scaffold0067 (283-410)||(7972-8103)
[»] chr5 (3 HSPs)
chr5 (274-410)||(40254861-40254998)
chr5 (238-403)||(26050014-26050185)
chr5 (337-403)||(26053428-26053498)
[»] chr6 (1 HSPs)
chr6 (238-403)||(27074981-27075152)
[»] chr3 (3 HSPs)
chr3 (283-410)||(28703673-28703804)
chr3 (269-346)||(32893717-32893794)
chr3 (238-370)||(36611911-36612044)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 43654671 - 43654317
Alignment:
Q  18 aaattgaatactctgtttaaaagttttaataggatagagcacaaatcatatccggttgaggcagattagccaaggagacttacctgactcttaagcttac 117  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  43654671 aaattgaatactcagtttaaaagttttaataggatagagtacaaatcatattcggttgaggcagattagctaaggagacttacctgactctttagcttac 43654572  T
Q  118 aaatagaatgtaaaccccccacatttgtacataccggtaacattaacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagt 217  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||| || |||||||| |||||||||    
T  43654571 aaatagaatgtaaaccccccacatttgtatataccagtaacatcaacaaactatgtggtgtatgcgacaaagccggagcgctggtaaataaggaagaagt 43654472  T
Q  218 gaaatcatcatgcttgttaccattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaag 317  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43654471 gaaatcatcatgctcgttaccattgtcataatcgtctccaaccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaag 43654372  T
Q  318 ataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatcc 372  Q
    | |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43654371 aaaatgaaacataaaacatgaggcgtgacaatgtcactgaactaaggaattatcc 43654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 43659052 - 43658909
Alignment:
Q  271 agattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattat 370  Q
    ||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||| ||||| | ||||| ||||||||||||| ||||||||||||||    
T  43659052 agattgttgtttgcggataactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcatgacaatgtcactaaactaaggaattat 43658953  T
Q  371 ccg----attgcgcaactccctcggagtacaacaggttcttctc 410  Q
    |||    |||||||||||||| | ||||||||| ||||||||||    
T  43658952 ccgcagaattgcgcaactcccccagagtacaaccggttcttctc 43658909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 38640642 - 38640775
Alignment:
Q  281 tcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----att 376  Q
    |||||||||| |||||||||||||||||||||| || | ||| |||| ||||||| |||||||||| ||||||||||||||||||||||||||    |||    
T  38640642 tcgcggatgactgaaggatcacaacctgcaaaataataaaataaaacgtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaatt 38640741  T
Q  377 gcgcaactccctcggagtacaacaggttcttctc 410  Q
    | ||||||||| | ||||||||||||||| ||||    
T  38640742 gtgcaactcccccagagtacaacaggttcatctc 38640775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 402
Target Start/End: Complemental strand, 8363681 - 8363309
Alignment:
Q  34 ttaaaagttttaataggatagagcacaaatcatatccggttgaggcagattagccaaggagacttacctgactcttaagcttacaaatagaatgtaaacc 133  Q
    ||||| ||||||| ||| |||| |||||||||||| || ||||||||||||||  |||||||||||||||| |||| ||| |||||||||||||||||||    
T  8363681 ttaaaggttttaaaaggctagatcacaaatcatattcgcttgaggcagattagttaaggagacttacctgaatctttagcatacaaatagaatgtaaacc 8363582  T
Q  134 ccccacatttgtacataccggtaacattaacaaactatgtggtgtatgctacaaagcctgagtgccggtaaatacggaagaagtgaaatcatcatgcttg 233  Q
    | ||||||||||||||||| ||||||| | |||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||||    
T  8363581 ctccacatttgtacataccagtaacatcagcaaactatatggtgtatgcgacaaagcctgagtgccggtaactgcggaagaagtgaaatcatcatacttg 8363482  T
Q  234 ttaccattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaa 333  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||    ||||| |  ||||||||||||||||||||||||||| |||||||  |||||    
T  8363481 ttaccattgtcataatcttctccagtcataattccttagattgttaaatgcggaaggctgaaggatcacaacctgcaaaacaagaaaatgaaaggtaaaa 8363382  T
Q  334 ccagaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacagg 402  Q
    || || ||||||| ||||||||||||||||||||||||||    |||||||||||||  | ||||||||||||    
T  8363381 cctgatgcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactcctccagagtacaacagg 8363309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 8365670 - 8365589
Alignment:
Q  282 cgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaag 363  Q
    ||||||||| ||||||||||||||||| |||||||||  |||||| |||||||| |||||||||| ||||||||||||||||    
T  8365670 cgcggatgactgaaggatcacaacctgaaaaacaagaacatgaaaaataaaacctgaggcgtgactatgtcactgaactaag 8365589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 14636371 - 14636415
Alignment:
Q  237 ccattgtcataatcgtctccagccataattcattagattgttgtt 281  Q
    ||||||| | |||| |||||||||||||||| |||||||||||||    
T  14636371 ccattgttagaatcctctccagccataattccttagattgttgtt 14636415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 245 - 410
Target Start/End: Complemental strand, 47323434 - 47323268
Alignment:
Q  245 ataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtg 344  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||  |||||||    |||||    
T  47323434 ataatcgtctccagccataattccttagattgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaagtaaaacc---tgcgtg 47323338  T
Q  345 acaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctc 410  Q
    || ||||||| ||||||||||||||||||    ||||||||| ||||   |||||||||| |||||||||    
T  47323337 actatgtcaccgaactaaggaattatccgcaaaattgcgcaattccccaagagtacaacatgttcttctc 47323268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 410
Target Start/End: Original strand, 13016342 - 13016481
Alignment:
Q  275 tgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg- 373  Q
    |||| ||||||||||| | |||||||| |||||||||||  ||| ||| |||| ||||| | ||||||||||||||||||||||||||||||||||| |     
T  13016342 tgttattcgcggatgactaaaggatcataacctgcaaaaacagaaaataaaacgtaaaatctgaggcgtgacaatgtcactgaactaaggaattatctgc 13016441  T
Q  374 ---attgcgcaactccctcggagtacaacaggttcttctc 410  Q
       |||||| |||| || |  |||||||||||||||||||    
T  13016442 agaattgcgtaacttccccatagtacaacaggttcttctc 13016481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 373
Target Start/End: Complemental strand, 47326982 - 47326883
Alignment:
Q  274 ttgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg 373  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | | ||   |||||   |||||||||| ||||||| ||||||||||| ||||||    
T  47326982 ttgttgttcgcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagagtaaaatttgaggcgtgactatgtcacagaactaaggaaatatccg 47326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 249 - 410
Target Start/End: Complemental strand, 6799291 - 6799126
Alignment:
Q  249 tcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa 348  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| |||| ||| |||  ||||||| | |||||||| |    
T  6799291 tcgtctccagccataattccttaaattgttgtttgcggatgactgaaggatcacaacctgcaaaataagaaaataaaaagtaaaacctgtggcgtgacta 6799192  T
Q  349 tgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctc 410  Q
    |||||||||||||||||||||||||    ||||||| |||||| |  ||||| |||||||||||||    
T  6799191 tgtcactgaactaaggaattatccgcagaattgcgcgactcccccaaagtactacaggttcttctc 6799126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 42528323 - 42528391
Alignment:
Q  283 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgt 351  Q
    |||||||| ||||||||||||||||||||||||||| |||||||| ||||||  |||||||||| ||||    
T  42528323 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaacttgaggcgtgactatgt 42528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 8996039 - 8996108
Alignment:
Q  247 aatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaa 316  Q
    |||| ||| |||||||||||| ||||||||||||  |||||||| |||||||||||| ||||||||||||    
T  8996039 aatcttcttcagccataattccttagattgttgtatgcggatgactgaaggatcacatcctgcaaaacaa 8996108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 387
Target Start/End: Original strand, 8986594 - 8986712
Alignment:
Q  275 tgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaa--tgtcactgaactaaggaattatcc 372  Q
    |||||| || ||||||  ||||||||||| ||||||||||||   ||| |||| ||||| | |||||||||| |  |||||||| |||||||||||||||    
T  8986594 tgttgtacgtggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacgtaaaatctgaggcgtgactacgtgtcactggactaaggaattatcc 8986693  T
Q  373 g----attgcgcaactccc 387  Q
    |    ||||||||||||||    
T  8986694 gtagaattgcgcaactccc 8986712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 410
Target Start/End: Original strand, 41455343 - 41455503
Alignment:
Q  254 tccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtca 353  Q
    ||||| |||||||| |||||||||||   |||||||| |||||||||| ||||| |||||||||| ||| |||  ||||| | |||||||||| ||||||    
T  41455343 tccagtcataattccttagattgttgactgcggatgactgaaggatcataacctacaaaacaagaaaataaaaagtaaaatctgaggcgtgactatgtca 41455442  T
Q  354 ctgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggttcttctc 410  Q
    ||||||||||||||||||||    |||||||||||||| |  |||||||||||||| ||||    
T  41455443 ctgaactaaggaattatccgcagaattgcgcaactcccccaaagtacaacaggttcatctc 41455503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 370
Target Start/End: Complemental strand, 32355370 - 32355283
Alignment:
Q  283 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattat 370  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  ||||||| ||||||||||||| ||||||||||||| ||||||    
T  32355370 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggcgtgacaatatcactgaactaagaaattat 32355283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 410
Target Start/End: Original strand, 41451688 - 41451820
Alignment:
Q  283 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 378  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  ||||||  |||||||||| |||||||| |||||||||||||||||    ||||     
T  41451688 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacatgaggcgtgactatgtcactaaactaaggaattatccgcagaattgt 41451787  T
Q  379 gcaact-ccctcggagtacaacaggttcttctc 410  Q
    |||||| ||| | ||||||||||||||| ||||    
T  41451788 gcaactccccccagagtacaacaggttcatctc 41451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 283 - 410
Target Start/End: Complemental strand, 8103 - 7972
Alignment:
Q  283 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 378  Q
    ||||||||  ||||||||| |||||||||||||||| ||| |||  ||||||| |||| ||||| ||||||||||||||||||||||||||    |||||    
T  8103 gcggatgacggaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggtgtgactatgtcactgaactaaggaattatccgcaaaattgc 8004  T
Q  379 gcaactccctcggagtacaacaggttcttctc 410  Q
    ||||||||| | ||||||||||||||| ||||    
T  8003 gcaactcccccagagtacaacaggttcatctc 7972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 410
Target Start/End: Complemental strand, 40254998 - 40254861
Alignment:
Q  274 ttgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatcc- 372  Q
    ||||||||||||||||| ||||||||||||||||| |||| || | ||| |||| ||||||   ||||||||| |||||||||||||||||||||||||     
T  40254998 ttgttgttcgcggatgactgaaggatcacaacctgtaaaataataaaataaaacgtaaaac---aggcgtgactatgtcactgaactaaggaattatcca 40254902  T
Q  373 ---gattgcgcaactccctcggagtacaacaggttcttctc 410  Q
        |||||||||||||  |  |||||||||||||| ||||    
T  40254901 cagaattgcgcaactcctccatagtacaacaggttcatctc 40254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 26050185 - 26050014
Alignment:
Q  238 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataat-gaaacataaaa-cc 335  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| ||||||||||||||||||  | | |  |||  ||||| ||    
T  26050185 cattgtcaaaattttctccagccataattccttagattgttgaaagcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccc 26050086  T
Q  336 agaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 403  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  26050085 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt 26050014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 26053498 - 26053428
Alignment:
Q  337 gaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 403  Q
    |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  26053498 gaggcgtgactaagtcactggactaaggaattatccgtagaattgcgcaactcccccagaatacaacaggt 26053428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 27075152 - 27074981
Alignment:
Q  238 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataat-gaaacataaaa-cc 335  Q
    |||||||| |||  |||||||||||||||| |||||||||||   |||||||| ||||| ||||||||||||||||||| | | |  |||  ||||| ||    
T  27075152 cattgtcagaattttctccagccataattccttagattgttgaatgcggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccc 27075053  T
Q  336 agaggcgtgacaatgtcactgaactaaggaattatccg----attgcgcaactccctcggagtacaacaggt 403  Q
     |||||||||| | ||||||| ||||||||||||||||    |||||||||||||| | || ||||||||||    
T  27075052 tgaggcgtgactaagtcactggactaaggaattatccgcagaattgcgcaactcccccagaatacaacaggt 27074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 410
Target Start/End: Original strand, 28703673 - 28703804
Alignment:
Q  283 gcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgacaatgtcactgaactaaggaattatccg----attgc 378  Q
    |||||||| |||||||||| |||||||||||||||| ||| |||  |||||   ||||| |||  ||||||||||||||||||||||||||    |||||    
T  28703673 gcggatgagtgaaggatcataacctgcaaaacaagaaaataaaaagtaaaatttgaggcatgattatgtcactgaactaaggaattatccgcagaattgc 28703772  T
Q  379 gcaactccctcggagtacaacaggttcttctc 410  Q
    ||||||||| |  ||||||||| |||| ||||    
T  28703773 gcaactcccccaaagtacaacaagttcatctc 28703804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 32893794 - 32893717
Alignment:
Q  269 ttagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccagaggcgtgac 346  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |  ||||||| ||||||||||    
T  32893794 ttagattgttgtttgcggatgactgaaggatcataacctgcaaaacaagaaaataacaagtaaaacctgaggcgtgac 32893717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 370
Target Start/End: Original strand, 36611911 - 36612044
Alignment:
Q  238 cattgtcataatcgtctccagccataattcattagattgttgttcgcggatgattgaaggatcacaacctgcaaaacaagataatgaaacataaaaccag 337  Q
    |||||| | |||| |||||| ||||||||| ||||||||  |   || ||||| ||||||||||||||||||||||||| | |||||||| ||||| |      
T  36611911 cattgttagaatcatctccatccataattccttagattgcggaaggcagatgactgaaggatcacaacctgcaaaacaataaaatgaaacgtaaaatcta 36612010  T
Q  338 aggcgtgac-aatgtcactgaactaaggaattat 370  Q
    ||||||||| |  ||||||| |||||| ||||||    
T  36612011 aggcgtgactaccgtcactggactaagaaattat 36612044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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