View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_high_28 (Length: 371)
Name: NF20296_high_28
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 43907154 - 43906972
Alignment:
| Q |
1 |
agaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcgttgtattcaagagaattcttgagaagatcaacaagatctttcgtaagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43907154 |
agaatgaatcaaaatttacaagaaagttaaagattacccttccatatgcattgtattcaagagaattcttgagaagatcaacaagatctttcttaagaaa |
43907055 |
T |
|
| Q |
101 |
tttttgcactgcgtttcgcttcttccttattgtttctaatcttgtcttaatcaacttcaagcaatttttgctgttaattttcc |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43907054 |
tttttgcactgcgtttcgcttcttccttattgtttctaatcttgtctttatcaacttcaagcaatttttgctgttaattttcc |
43906972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 254 - 353
Target Start/End: Complemental strand, 43906902 - 43906803
Alignment:
| Q |
254 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43906902 |
cattggctgtgtttagtgtttaccattttgtataactttttggtttcaacaatccttgaaacattttcactctgagaaagaattgtattgaaacaggatc |
43906803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University