View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_30 (Length: 368)
Name: NF20296_high_30
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 51405016 - 51405364
Alignment:
| Q |
1 |
attccataaacaccagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgtt |
100 |
Q |
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| T |
51405016 |
attccataaacaccagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatgagcttgtgttgagtcatgcaccttgttctgtt |
51405115 |
T |
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| Q |
101 |
ggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatc |
200 |
Q |
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| T |
51405116 |
ggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgttgtaatcttcttcggaggacgcgacgatc |
51405215 |
T |
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| Q |
201 |
atgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaatgacattgtcttttgg |
300 |
Q |
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| T |
51405216 |
atgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaatgacattgtcttttgg |
51405315 |
T |
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| Q |
301 |
tgctaaattggttggtgtagcacaagataagagcaaaacagttgtgatt |
349 |
Q |
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| T |
51405316 |
tgctaaattggttggtgtagcacaagataagagcaaaacagttgtgatt |
51405364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 29981660 - 29981430
Alignment:
| Q |
23 |
gatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttggaattttgattgatcgcggtc |
122 |
Q |
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| T |
29981660 |
gatggaactatggaatcattagggcactcgtttcgcgtaatgaatggacttgtacttagccatgctccttgctcggttggaattttggttgatcgtggcc |
29981561 |
T |
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| Q |
123 |
tcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatgaagcacttgcttatggtat |
222 |
Q |
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| T |
29981560 |
ttggagggacaactcaagtccatgctagtgatgtttcttacaatgttgttgtagctttctttggaggatgtgatgatcgagaagcacttgcgtacggtat |
29981461 |
T |
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| Q |
223 |
gagaatggcagaacatccaggaattttactc |
253 |
Q |
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| T |
29981460 |
gagaatagcagaacatcctggaatttcactc |
29981430 |
T |
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