View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_high_33 (Length: 346)
Name: NF20296_high_33
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 115 - 328
Target Start/End: Complemental strand, 7534933 - 7534720
Alignment:
| Q |
115 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534933 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7534834 |
T |
|
| Q |
215 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7534833 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
7534734 |
T |
|
| Q |
315 |
tagagatgattgct |
328 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7534733 |
tagagatgattgct |
7534720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 115 - 328
Target Start/End: Complemental strand, 7449395 - 7449182
Alignment:
| Q |
115 |
caagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
214 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449395 |
caagaatggttttgcagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgca |
7449296 |
T |
|
| Q |
215 |
tgtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449295 |
tgtagtatgttgggagatattagtgagggaatgctgcactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctag |
7449196 |
T |
|
| Q |
315 |
tagagatgattgct |
328 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7449195 |
tagagatgattgct |
7449182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 7449520 - 7449417
Alignment:
| Q |
13 |
agcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactactt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7449520 |
agcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactactt |
7449421 |
T |
|
| Q |
113 |
ggca |
116 |
Q |
| |
|
|||| |
|
|
| T |
7449420 |
ggca |
7449417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 7535058 - 7534955
Alignment:
| Q |
13 |
agcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactactt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7535058 |
agcacagacaatagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactactt |
7534959 |
T |
|
| Q |
113 |
ggca |
116 |
Q |
| |
|
|||| |
|
|
| T |
7534958 |
ggca |
7534955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 18664383 - 18664173
Alignment:
| Q |
116 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18664383 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
18664284 |
T |
|
| Q |
216 |
gtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctagt |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||| |||||||| |||||||| |
|
|
| T |
18664283 |
gtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgacattgtaccaactatggaacattatgtaagtctagt |
18664184 |
T |
|
| Q |
316 |
agagatgattg |
326 |
Q |
| |
|
||| ||||||| |
|
|
| T |
18664183 |
agacatgattg |
18664173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 18664493 - 18664411
Alignment:
| Q |
29 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
18664493 |
tattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgactgagcgcgatttgactact |
18664411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 18664798 - 18664740
Alignment:
| Q |
24 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
82 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
18664798 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
18664740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 116 - 326
Target Start/End: Original strand, 15079445 - 15079655
Alignment:
| Q |
116 |
aagaatgggtttccagaagattcaattgatatatttactcaatttaaaaacatgggactaaaacctgatggccaaatgtttattggagtttttggtgcat |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15079445 |
aagaatgggtttgcagaagattcaattgatttatttactcaatttaaaaggtcaggactaaaacctgatggccaaatgtttattggggtttttggtgcat |
15079544 |
T |
|
| Q |
216 |
gtagtatgttgggagatattagtgagggaatgctccactttgaatccatgagcaaagactatggcattgtaccaacaatggcccattatgtcagtctagt |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||| | ||||||| ||||||||||| |||| |||||||| ||| |||| |
|
|
| T |
15079545 |
gtagtatgttgggagatattgttgagggaatgctgcactttgaatccatgagtagggactatgaaattgtaccaactatggaacattatgtaagtatagt |
15079644 |
T |
|
| Q |
316 |
agagatgattg |
326 |
Q |
| |
|
||| ||||||| |
|
|
| T |
15079645 |
agacatgattg |
15079655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Original strand, 15079335 - 15079417
Alignment:
| Q |
29 |
tattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttcaagagcatgcctgagtacgatttgactact |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| || |||| ||||||| |||| ||| ||||||||||||| |
|
|
| T |
15079335 |
tattggagatgtattttcaatgtggttctgtagatgatgcagtcaacgtattcaagaacatgaatgaacgcgatttgactact |
15079417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 15079030 - 15079088
Alignment:
| Q |
24 |
tagagtattggagatgtattttgaatgtggttctctagatgatgcaatcgacgtgttca |
82 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
15079030 |
tagaatattagagatgtattttcaatgtggttctgtagatgatgcagtcaacgtgttca |
15079088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University