View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_4 (Length: 613)
Name: NF20296_high_4
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 8151043 - 8151263
Alignment:
| Q |
17 |
aaccaaaagaacaagactgctaaagcagtgagttagcaacatcgtctcaaaaggacagaaccgcaagnnnnnnnnn--catgaaaaccaccggaaacaac |
114 |
Q |
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| T |
8151043 |
aaccaaaagaacaagactgctaaagcagtgagttagcaacatcgtctcaaaaggacagaaccgcaagaaaaaaaaaaacatgaaaaccaccggaaacaac |
8151142 |
T |
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| Q |
115 |
aactcctaaacaaccaccaattgaattgcaaaataataacacggctatattttaccaagacaagaataagcatagctgaaaagaaattttagagtacaga |
214 |
Q |
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| T |
8151143 |
aactcctaaacaaccaccaattgaattgcaaaataataacactgctatattttaccaagacaagaataagcgtagctgaaaagaaattttagagtacaga |
8151242 |
T |
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| Q |
215 |
aacgtaccaaattggaaaacc |
235 |
Q |
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| T |
8151243 |
aacgtaccaaattggaaaacc |
8151263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 425 - 597
Target Start/End: Original strand, 8151592 - 8151763
Alignment:
| Q |
425 |
gcaacaagcaaattgcgaaaggagtctaatcttttcaaggcaaactacatgagtgtatgccttctcgtagtcgataccctcttcttgattgtatcatttt |
524 |
Q |
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| T |
8151592 |
gcaacaagcaaatcgcgaaaggagtctaatcttttcaaggcggactacatgagtgtatgtcttctcgtagtcga-accctcttcttgattgtatcatttt |
8151690 |
T |
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| Q |
525 |
ttccactaagtgtgctttatttcgagtgatgattccattttcatctaatttgttcgtaaagacccatttagtg |
597 |
Q |
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| T |
8151691 |
ttccactaagcgtgctttatttccagtgatgattccattttcatctaatttgttcataaagacccatttagtg |
8151763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 8151293 - 8151411
Alignment:
| Q |
265 |
acgatttacctaataatgctctacacctatatttagaatgataaataggtctattttttaggataaataaaacaagggggccacatggattaaatatacg |
364 |
Q |
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| T |
8151293 |
acgatttacctaataatgctctacacctatatttagaatgataaataggtctattttttaggataaataaaacaa-ggggtgacatggattaaatgcaca |
8151391 |
T |
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| Q |
365 |
aatatttaacgattggtcat |
384 |
Q |
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| T |
8151392 |
aatattcaatgattggtcat |
8151411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 425
Target Start/End: Original strand, 8151451 - 8151485
Alignment:
| Q |
391 |
agagaatcttcattaatttaaaaatataatcttgg |
425 |
Q |
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| T |
8151451 |
agagaatcttcattaattttaaaatataatcttgg |
8151485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 20066540 - 20066592
Alignment:
| Q |
541 |
ttatttcgagtgatgattccattttcatctaatttgttcgtaaagacccattt |
593 |
Q |
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| T |
20066540 |
ttatttcgtgcgattattccattttcatccaatttgttcctaaagacccattt |
20066592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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