View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_41 (Length: 304)
Name: NF20296_high_41
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 52140705 - 52140444
Alignment:
| Q |
21 |
tctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctat |
120 |
Q |
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| T |
52140705 |
tctgttaatgcattatctttcaatatggcttcttcttca---------accaaagtaacccttaagcttctggttgacaaaaagcaaaacaaagttctat |
52140615 |
T |
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| Q |
121 |
tcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcattt |
220 |
Q |
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| T |
52140614 |
tcgctgaagcatccaaagctgccataaactctctcttaaacatgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatgacatgcattt |
52140515 |
T |
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| Q |
221 |
gtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
291 |
Q |
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| T |
52140514 |
gtttggcagcttaggaaatctatatcatactagtactactgtccaaaatctcaaccagaattatgttctct |
52140444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 60 - 292
Target Start/End: Complemental strand, 52131077 - 52130839
Alignment:
| Q |
60 |
tcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctattcgctgaagcatccaaagccgccatagactctctcttaa |
159 |
Q |
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| T |
52131077 |
tcttcttccaccaaaatgacccttaagcttccggttgacacaaagcaaaacaaagttctgtttgcagaagcatcaaaagctgccgtagactctctcttaa |
52130978 |
T |
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| Q |
160 |
acatgtttcgtttgtcttttggtactgttgtaaggctcat---gagaaacaacg---acaagcatttgtttggcagcttaggaaatctatatcatactag |
253 |
Q |
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| T |
52130977 |
acatgtttcacttgtcttttggcacagttttaaggctcataagtagcaataacgttaacatgcatttggcgggtagcttaggcaatctgcatcacactag |
52130878 |
T |
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| Q |
254 |
tactactctccaaaacctcaaccagaattatgttctctc |
292 |
Q |
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| T |
52130877 |
tagtactctccaaaacctcaaccagaattatgttctctc |
52130839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 17525011 - 17525272
Alignment:
| Q |
21 |
tctgttaatgcattatctttcaatatggcttcttcttcatcttcttcaaccaaagtgacccttaagcttctgtttgacaaaaagcaaaacaaagttctat |
120 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| | | |
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| T |
17525011 |
tctgttaatgcattatctttcaatatggcttctt---------cttcaaccaaagtgacccttaggcttctggttgacacaaagcaaaacaaagttatgt |
17525101 |
T |
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| Q |
121 |
tcgctgaagcatccaaagccgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcattt |
220 |
Q |
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| T |
17525102 |
ttgccgaatcatcacaagctgccatagactctctcttaaacatgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacgacatgcattt |
17525201 |
T |
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| Q |
221 |
gtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
291 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||||| |
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| T |
17525202 |
gtttggcagcttaggaaatctgtatcatactagtactactgtccaaaatctcaaccaaaattacgttctct |
17525272 |
T |
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