View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_high_44 (Length: 290)
Name: NF20296_high_44
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_44 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] scaffold0039 (2 HSPs) |
| | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 29633475 - 29633174
Alignment:
| Q |
7 |
tcccaatttccctatcacaaaactgacagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaa |
106 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29633475 |
tccccatttccctatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaa |
29633376 |
T |
|
| Q |
107 |
gtgtaataacgatcacttgctaagaatagaattgaaatgataaaaatcaagattaaaggaccctgtcctgcatatagatgttt----------------- |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
29633375 |
gtgtaataacgatcacttgctaagaatagaattggaatgataaaaatccagattaaaggtccctgtcctctatatagatgttttacattatagaaaaaga |
29633276 |
T |
|
| Q |
190 |
--tagattatagatgactaaatatgaaaaattaattcctgtaaaacacacttacggtgaagggaaaccataaatgttcatcgaaaaatatgttaacaatt |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29633275 |
tatagattatagatgactaaatatgaaaaattaattcctgtaaaacacacttacggtgaaggg-aaccataaatgtccatcgaaaaatatgttaacaatt |
29633177 |
T |
|
| Q |
288 |
ctc |
290 |
Q |
| |
|
||| |
|
|
| T |
29633176 |
ctc |
29633174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 40389409 - 40389251
Alignment:
| Q |
4 |
atgtcccaatttccctatcacaaaactgacagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagac |
103 |
Q |
| |
|
||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40389409 |
atgtccccatttccatatcgcaaaactggcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagat |
40389310 |
T |
|
| Q |
104 |
caagtgtaataacgatcacttgctaagaatagaattgaaatgataaaaatcaagattaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
40389309 |
caagtgtaataacgatcacttgctaagaatagaattggaatgataaaaatccagattaa |
40389251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 40388862 - 40388763
Alignment:
| Q |
190 |
tagattatagatgactaaatatgaaaaattaattcctgtaaaacacacttacggtgaagggaaaccataaatgttcatcgaaaaatatgttaacaattct |
289 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
40388862 |
tagattatagaagactaaatatgaaaaattaattcctgtaaaacacacttacggtgaaggg-aaccataaatatccatcgaaaaatatgttaaccattct |
40388764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 44339143 - 44339231
Alignment:
| Q |
66 |
tttcctatttctttatattttctttgcctcttcaagaccaagtgtaataacgatcacttgctaagaatagaattgaaatgataaaaatc |
154 |
Q |
| |
|
||||||||||||| || |||||| || |||| ||| ||||||||||| | ||||||||| |||| || ||||| ||||||||||||| |
|
|
| T |
44339143 |
tttcctatttcttcatcttttctctgtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatc |
44339231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 44335831 - 44335732
Alignment:
| Q |
66 |
tttcctatttctttatattttctttgcctcttcaagaccaagtgtaataacgatcacttgctaagaatagaattgaaatgataaaaatcaagattaaagg |
165 |
Q |
| |
|
||||||||||||| || |||||| | |||| ||| ||||||||||| | ||||||||| |||| || ||||| ||||||||||||||| || ||||| |
|
|
| T |
44335831 |
tttcctatttcttcatcttttctccgtctctacaaaaccaagtgtaaaacagatcacttggtaaggatgaaattggaatgataaaaatcaaaatcaaagg |
44335732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 48279556 - 48279261
Alignment:
| Q |
12 |
atttccctatcacaaaactgacagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaagtgta |
111 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48279556 |
atttccctatcgcagaactagcagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaagtgta |
48279457 |
T |
|
| Q |
112 |
ataacgatcacttgctaagaatagaattgaaatgataaaaatcaagattaaaggaccctgtcctgcatatagatgttt-------------------tag |
192 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
48279456 |
ataacgatcacttgctaagaa-agaattggaatgataaaaatccagattaaaggtccctgtcctccatatagatgttttagattatagaaaaagatatag |
48279358 |
T |
|
| Q |
193 |
attatagatgactaaatatgaaaaattaattcctgtaaaacacacttacggtgaagggaaaccataaatgttcatcgaaaaatatgttaacaattctc |
290 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
48279357 |
attatagatgactaaatataaaaaattaattcttgtaaaacacacttacggtgaaggg-aaccatacatgtccatcgaaaaatatgttaacaattctc |
48279261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 83165 - 82972
Alignment:
| Q |
7 |
tcccaatttccctatcacaaaactgacagttgaaaaacatggcattgataccctactcgtttcctatttctttatattttctttgcctcttcaagaccaa |
106 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83165 |
tccccatttccctatcgcaaaactggcagttgaaaaacatgacattgataccctacttgtttcctatttctttatattttctttgcctcttcaagaccaa |
83066 |
T |
|
| Q |
107 |
gtgtaataacgatcacttgctaagaatagaattgaaatgataaaaatcaagattaaaggaccctgtcctgcatatagatgttttagattataga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| || ||| || |||||||||||||||||||||||| |
|
|
| T |
83065 |
gtgtaataacgatcacttgctatgaatagaattggaatgataaaaatccagattaaaggtccatgttctccatatagatgttttagattataga |
82972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 82963 - 82922
Alignment:
| Q |
190 |
tagattatagatgactaaatatgaaaaattaattcctgtaaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
82963 |
tagattatagatgactaaatatgaaaaattaattcctgtaaa |
82922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 14164948 - 14165017
Alignment:
| Q |
61 |
actcgtttcctatttctttatattttctttgcctcttcaagaccaagtgtaataacgatcacttgctaag |
130 |
Q |
| |
|
|||| ||||||||||||| | |||||| || |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
14164948 |
actcctttcctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaag |
14165017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 16329 - 16260
Alignment:
| Q |
61 |
actcgtttcctatttctttatattttctttgcctcttcaagaccaagtgtaataacgatcacttgctaag |
130 |
Q |
| |
|
|||| ||| ||||||||| | |||||| || |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
16329 |
actccttttctatttcttcaccttttctctgtctcttcaaaaccaagtgtaataatgatcacttgctaag |
16260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University