View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_high_46 (Length: 281)

Name: NF20296_high_46
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_high_46
NF20296_high_46
[»] chr5 (3 HSPs)
chr5 (1-150)||(13088111-13088259)
chr5 (1-150)||(13016733-13016881)
chr5 (219-268)||(13678767-13678816)
[»] chr4 (3 HSPs)
chr4 (226-269)||(54734621-54734664)
chr4 (197-271)||(53385309-53385383)
chr4 (219-264)||(33283041-33283086)
[»] chr3 (4 HSPs)
chr3 (221-268)||(5834720-5834767)
chr3 (211-254)||(46002588-46002631)
chr3 (229-270)||(35585412-35585453)
chr3 (229-270)||(54718328-54718369)
[»] chr2 (1 HSPs)
chr2 (229-266)||(24127945-24127982)
[»] chr6 (1 HSPs)
chr6 (188-268)||(15500133-15500213)
[»] chr8 (1 HSPs)
chr8 (229-268)||(33472816-33472855)
[»] chr7 (1 HSPs)
chr7 (229-270)||(42273008-42273049)
[»] chr1 (1 HSPs)
chr1 (237-270)||(40371079-40371112)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13088259 - 13088111
Alignment:
Q  1 ctattttccaacaacatatattaatcgagaaccacgacagaagactcaaatttcaaaaactggccatgttaataaatctgatccaacaatagatcggttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  13088259 ctattttccaacaacatatatgaatcgagaaccacgacagaagactcaaatttcaaaa-ctagccatgttaataaatctgatccaacaatagatcggttt 13088161  T
Q  101 actcttgatgattttcggcagagaaagcacaagaaaacgcacttacactt 150  Q
    ||||||||||||||| ||  |||||||||||||||||| |||||||||||    
T  13088160 actcttgatgatttttggtggagaaagcacaagaaaacacacttacactt 13088111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13016881 - 13016733
Alignment:
Q  1 ctattttccaacaacatatattaatcgagaaccacgacagaagactcaaatttcaaaaactggccatgttaataaatctgatccaacaatagatcggttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  13016881 ctattttccaacaacatatatgaatcgagaaccacgacagaagactcaaatttcaaaa-ctagccatgttaataaatctgatccaacaatagatcggttt 13016783  T
Q  101 actcttgatgattttcggcagagaaagcacaagaaaacgcacttacactt 150  Q
    ||||||||||||||| ||  |||||||| ||||||||| |||||||||||    
T  13016782 actcttgatgatttttggtggagaaagcgcaagaaaacacacttacactt 13016733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 13678767 - 13678816
Alignment:
Q  219 tgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 268  Q
    |||||| ||||||| |||||||||  |||||||| |||||||||||||||    
T  13678767 tgaaatgttagggtcaaggtataaccgtaggggtgtggggtaaaacttcc 13678816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 54734664 - 54734621
Alignment:
Q  226 ttagggtgaaggtataaatgtaggggtatggggtaaaacttcct 269  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  54734664 ttagggtgaaggtataattgtaggggtatggggtataacttcct 54734621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 53385309 - 53385383
Alignment:
Q  197 agggtaaaataggcagttcatatgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttccttt 271  Q
    ||||||||||||| ||||||||  |||| | |||||||  ||||| ||||||||||||  ||||||| |||||||    
T  53385309 agggtaaaataggaagttcatacaaaatgtaagggtgagagtatagatgtaggggtataaggtaaaatttccttt 53385383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 33283041 - 33283086
Alignment:
Q  219 tgaaatattagggtgaaggtataaatgtaggggtatggggtaaaac 264  Q
    ||||||||| |||| |||||||||  ||||||||||||||||||||    
T  33283041 tgaaatattggggtcaaggtataaccgtaggggtatggggtaaaac 33283086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 268
Target Start/End: Complemental strand, 5834767 - 5834720
Alignment:
Q  221 aaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 268  Q
    ||||||| |||| ||||||||||||||||||| |||||||||||||||    
T  5834767 aaatattggggtcaaggtataaatgtaggggtgtggggtaaaacttcc 5834720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 46002588 - 46002631
Alignment:
Q  211 agttcatatgaaatattagggtgaaggtataaatgtaggggtat 254  Q
    ||||||||||||||||  ||||||||||||||||||||||||||    
T  46002588 agttcatatgaaatataggggtgaaggtataaatgtaggggtat 46002631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 35585412 - 35585453
Alignment:
Q  229 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 270  Q
    ||||||||||||||  |||||||||||||||| |||||||||    
T  35585412 gggtgaaggtataatagtaggggtatggggtataacttcctt 35585453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 54718369 - 54718328
Alignment:
Q  229 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 270  Q
    |||| ||||||||||||||||||| ||||||| |||||||||    
T  54718369 gggtcaaggtataaatgtaggggtgtggggtataacttcctt 54718328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 24127982 - 24127945
Alignment:
Q  229 gggtgaaggtataaatgtaggggtatggggtaaaactt 266  Q
    |||||||||||||||||||||||||||||||| |||||    
T  24127982 gggtgaaggtataaatgtaggggtatggggtataactt 24127945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 15500213 - 15500133
Alignment:
Q  188 atatatatgagggtaaaataggcagttcatatgaaatattagggtgaaggtataaatgtaggggtatggggtaaaacttcc 268  Q
    ||||||| ||||||||||| | || |||||   |||| | ||||  ||||||||| |||||||||||||||||||||||||    
T  15500213 atatatacgagggtaaaattgacaattcatgcaaaatgtaagggaaaaggtataattgtaggggtatggggtaaaacttcc 15500133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 33472855 - 33472816
Alignment:
Q  229 gggtgaaggtataaatgtaggggtatggggtaaaacttcc 268  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  33472855 gggtaaaggtataaatgtaggggtgtggggtaaaacttcc 33472816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 42273008 - 42273049
Alignment:
Q  229 gggtgaaggtataaatgtaggggtatggggtaaaacttcctt 270  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  42273008 gggtgaaggtacgaatgtaggggtatagggtaaaacttcctt 42273049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 40371112 - 40371079
Alignment:
Q  237 gtataaatgtaggggtatggggtaaaacttcctt 270  Q
    |||||||||||||||| |||||||||||||||||    
T  40371112 gtataaatgtaggggtgtggggtaaaacttcctt 40371079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University