View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_high_48 (Length: 279)
Name: NF20296_high_48
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 8476019 - 8476276
Alignment:
| Q |
17 |
caatataagcatagagaccaatccttaa-tgtactcattcaccatctttcaatacatcattcaattatgaattctaaggatttttcttttatatcaagct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8476019 |
caatataagcatagagaccaatccttaaatgtactcattcaccatctttcaatacatcattcaattatgaattctaaggatttttcttttatatcaagct |
8476118 |
T |
|
| Q |
116 |
ctcaaatttattttctcttatcatctcattgatcccgtgatttgtaacgttatatttttcttattaagttcttataaaacaaattattctttcattttta |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8476119 |
ctcaagtttattttctcttatcatctcattgatcccgtgatttgtaacgttatatttttcttattacgttcttataaaacaaattattctttcattttta |
8476218 |
T |
|
| Q |
216 |
ttctcacaagcatgcaaataaaccaaatgaaaatctgtccattgttctttcttctcac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8476219 |
ttctcacaagcatgcaaataaaccaaatgaaaatctgtccattgttctttcttttcac |
8476276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University