View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_52 (Length: 261)
Name: NF20296_high_52
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 41199316 - 41199075
Alignment:
| Q |
5 |
gcatactaatttctaccatcaggctgatatacttaaggttaaattaaccacttgagcagaacagaatgtgtaggctaaaatgatttcagccaaaaaactg |
104 |
Q |
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| T |
41199316 |
gcatactaattgctaccatcaggctgatatacttaggcttaaattaaccacttgagcataacagaatgtgtaggctaaaatgatttgagccaaaaaactg |
41199217 |
T |
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| Q |
105 |
aactagtatatcaattcagttactttaggtcaactagctcataaaatatgtnnnnnnnnnntgtgatcagataaaaatagattaagagaactatatatat |
204 |
Q |
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| T |
41199216 |
aactagtatatcaattcagttaatttaggttaactagctcataaaatatgt-aaaaaagaatgtgatcagataaatatagattaagagaactatatatat |
41199118 |
T |
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| Q |
205 |
gtgctttcttttctttattttaaaacatggaatcaaaattatt |
247 |
Q |
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| T |
41199117 |
gtgctttcttttctttactttaaaacatgaaatcaaaaatatt |
41199075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 41209261 - 41209158
Alignment:
| Q |
54 |
acttgagcagaacagaatgtgtaggctaaaatgatttcagccaaaaaactgaa--ctagtatatcaattcagttactttaggtcaactagctcataaaat |
151 |
Q |
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| T |
41209261 |
acttgaacagaacataatgtataggctaaaatgctttgagccaaaatattgaagggtattatatcaattcaattaatctagattaactagctcacaagat |
41209162 |
T |
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| Q |
152 |
atgt |
155 |
Q |
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|||| |
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| T |
41209161 |
atgt |
41209158 |
T |
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