View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_high_53 (Length: 252)
Name: NF20296_high_53
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_high_53 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 11191895 - 11192028
Alignment:
| Q |
1 |
cttttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactggatcaatcaatcagat |
100 |
Q |
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| T |
11191895 |
cttttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactgaatcaatccataagat |
11191994 |
T |
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| Q |
101 |
atgcttctgggcatcacattgacaacaggcttag |
134 |
Q |
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| T |
11191995 |
atgcttctggggatcacattgacaacaggcttag |
11192028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 11192024 - 11192095
Alignment:
| Q |
175 |
cttagtagattacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttcttctcac |
246 |
Q |
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| T |
11192024 |
cttagtagattacctccatgtagtgagtgtgatctatactatgtcaatcgggataccctattttcttatcac |
11192095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10308874 - 10308809
Alignment:
| Q |
1 |
cttttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggt |
66 |
Q |
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| T |
10308874 |
cttttgcatcaactggaaggtcaaagcaacgattctgccaaggcaacagagggcactgattctggt |
10308809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 246
Target Start/End: Complemental strand, 10308401 - 10308339
Alignment:
| Q |
184 |
ttacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttcttctcac |
246 |
Q |
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| T |
10308401 |
ttacctccatgtagtgagtgcgatctatactatgtcaatcgggataccctcttttcttatcac |
10308339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 10308605 - 10308490
Alignment:
| Q |
64 |
ggttttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatg |
163 |
Q |
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||||||||||||||| ||||| | |||| |||||||||||||||||| ||| | |||| | | |||||| ||| |||||| |||||||||||| |||| |
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| T |
10308605 |
ggttttaagaaaattgaactgagtgaatccatcagatatgcttctggggatcccgttgaaagctggcttaatacactactttgcttagatgtttcaaatg |
10308506 |
T |
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| Q |
164 |
cccttcttaatcttag |
179 |
Q |
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| T |
10308505 |
ccatccctaatcttag |
10308490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 38431025 - 38430982
Alignment:
| Q |
196 |
agtgagtgtgatctatactatgtcaatcgggataccctattttc |
239 |
Q |
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| T |
38431025 |
agtgagtgtgatctatactatgtcaatcgggatactctattttc |
38430982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 38431239 - 38431141
Alignment:
| Q |
67 |
tttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatgcc |
165 |
Q |
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| T |
38431239 |
tttaagaaaatagaactgagtgaatccatcagatatgctcctggggatcctattgaaagctggcttaacacattactttgcttagatgtttcaaatgcc |
38431141 |
T |
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