View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_1 (Length: 707)
Name: NF20296_low_1
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 342 - 697
Target Start/End: Complemental strand, 8236019 - 8235664
Alignment:
| Q |
342 |
tcttgaataaaaaatattttctttgtacnnnnnnntttgttactttgtttatgcgtcatctatttcaattatagttgaaccgattgatttatttaaacaa |
441 |
Q |
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| T |
8236019 |
tcttgaataaaaaatattttctttgtacaaaaaaatttgttactttgtttatgcgtcatctatttcaattatagttgaaccaattgatttatttaaacaa |
8235920 |
T |
|
| Q |
442 |
cgacttagagagatctgatcgtgtcgatttcaactcctcttttaaaaacattgctatagatggatggtttccttgcaataatttaattttcttttcaaga |
541 |
Q |
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| T |
8235919 |
cgacttagagagatctgatcgtgtcgatttcaactcctcttttaaaaacattgctatagatagatggtttccttgcaataatttaattttcttttcaaga |
8235820 |
T |
|
| Q |
542 |
atgcgttgatttgtttcttctgcatctaaatgatcaaagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagagg |
641 |
Q |
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| T |
8235819 |
atgcgttgatttgtttcttctgcatctaaatgatcaaagaatatatattttgtagtccaaacaacaaatatggatcaaaagacacaagtgaaaccagagg |
8235720 |
T |
|
| Q |
642 |
aaagaaggaatgatacaccaacacaaaatcaaatagtgtcagtgtctcgccctttg |
697 |
Q |
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| T |
8235719 |
aaagaaggaatgatacacaaacacaaaatcaaatagtgtcagtgtctcgccctttg |
8235664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 8236343 - 8236064
Alignment:
| Q |
18 |
ctttcttatgtatccattgttatctctcttcttcacttcccctcnnnnnnntctctcttcttcacttaagtatttttcttcagtttcgaactaaaatatc |
117 |
Q |
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| T |
8236343 |
ctttcttatgtatccattgttatctctcttcttcactttccctcaaaaaaatctctcttcttcacttaagtatttttcttcagtttcgaactaaaatctc |
8236244 |
T |
|
| Q |
118 |
aatctctcccaagtaaagttgaggtatatcttcatctcatatatgtgttttcttcttgttataattacatgtagatatacatatttacttattagttaga |
217 |
Q |
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| T |
8236243 |
aatctctcccaagcaaagttgaggtatatcttcatctcatatgtatgttttcttcttgttataattacatgtagatatacatatttacttattagttaga |
8236144 |
T |
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| Q |
218 |
ttttttcatactgacttacataaacgatctcatacatgttgtttcatggacaaccaaaagtatttgaggagttcaatcta |
297 |
Q |
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| T |
8236143 |
ttttttcatactgacttacataaaggatctcatacatgttgtttcatggacaaccaaaagtatttgaggagttcaatcta |
8236064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 381 - 629
Target Start/End: Complemental strand, 8447891 - 8447645
Alignment:
| Q |
381 |
ttactttgtttatgcgtcatctatttcaattatagttgaaccgattgatttatttaaacaacgacttagagagatctgatcgtgtcgatttcaactcctc |
480 |
Q |
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| T |
8447891 |
ttactttgtttatttgtcatttagttcaattatagttgaactggttaaattatttaaagtaggacttagagactt--gatcggttcgatttcaattcctc |
8447794 |
T |
|
| Q |
481 |
ttttaaaaacattgctatagatggatggtttccttgcaataatttaattttcttttcaagaatgcgttgatttgtttcttctgcatctaaatgatcaaag |
580 |
Q |
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|||| |||||||| || || || |||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||| |
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| T |
8447793 |
tttttaaaacatttctgtatattgatggtttcctttcaataatttaattttcttgtcaagaatgttttaatttgtttcttctgcatataaatgatcaaag |
8447694 |
T |
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| Q |
581 |
aatatatattttgtagtcca-aacaacaaatatggatcaaaagacacaag |
629 |
Q |
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| T |
8447693 |
aatatatattttgtagtccataataac-aacatggatcaaaagacacaag |
8447645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 8448646 - 8448593
Alignment:
| Q |
97 |
tcagtttcgaactaaaatatcaatctctcccaagtaaagttgaggtatatcttc |
150 |
Q |
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| T |
8448646 |
tcagtttcgaactaaaatctcaatctctccatagtgaagtcgaggtatatcttc |
8448593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 8448493 - 8448437
Alignment:
| Q |
220 |
ttttcatactgacttacataaacgatctcatacatgttgtttcatggacaaccaaaa |
276 |
Q |
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| T |
8448493 |
ttttcatactgacaaacataaaagatcttatacatgttgtttcattggcaaccaaaa |
8448437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 396 - 428
Target Start/End: Original strand, 35718442 - 35718474
Alignment:
| Q |
396 |
gtcatctatttcaattatagttgaaccgattga |
428 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
35718442 |
gtcatctatttcaactatagttgaaccgattga |
35718474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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