View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_10 (Length: 542)
Name: NF20296_low_10
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Complemental strand, 4143427 - 4142915
Alignment:
| Q |
16 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatat-----ttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143427 |
tatacatatgactagaggaaaattaaatatatgtcatgttccatatgaaatttgatctaatgattagtataatatttcaggaccaatgtactataaagga |
4143328 |
T |
|
| Q |
111 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143327 |
ttttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaatatccaaagatctcataaattgga |
4143228 |
T |
|
| Q |
211 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4143227 |
ctcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttctcaggctcagccacaatagtccctggagaacaacctgttatatatat |
4143128 |
T |
|
| Q |
311 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacac |
410 |
Q |
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| T |
4143127 |
gttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacac |
4143028 |
T |
|
| Q |
411 |
cctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttagagacccttcaactgcatggcaaggaaaagatggaaaatggagagtac |
510 |
Q |
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| T |
4143027 |
cctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttagagacccttcaactgcatggcaaggaaaagatggaaaatggagagtac |
4142928 |
T |
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| Q |
511 |
taataggtgctcg |
523 |
Q |
| |
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| T |
4142927 |
tgataggtgctcg |
4142915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 88 - 522
Target Start/End: Complemental strand, 4138604 - 4138176
Alignment:
| Q |
88 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataaccctgatggagcaagctttggtgtgaataaaatggtatggggtcattcaat |
187 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| |||||| | |||||||||||||||||||| || |
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| T |
4138604 |
caggaccaatgtactataaaggtgtttaccatttattctaccaatataaccctgatgcagcaacatttggtcatgagaaaatggtatggggtcattctat |
4138505 |
T |
|
| Q |
188 |
atccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtga---aacaagttgcttctcaggctcagccacaatagtc |
284 |
Q |
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||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||| || ||||| | ||||| |||||||| ||| || |
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| T |
4138504 |
atcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgttggtcaggttcagccactatactc |
4138405 |
T |
|
| Q |
285 |
cctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctatgccgaaggatctatcagacc |
384 |
Q |
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|| || ||| |||||| ||||||||||||||| ||| || |||| | ||||||||||||| | ||||| ||||| ||| |||| || || | |
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| T |
4138404 |
ccaggtgaaaaacctg------ctatgttgtatacagg---aattgatcaaaatagacaccaagttcaaaatttagccatgccaaagaatctgtctgatc |
4138314 |
T |
|
| Q |
385 |
ctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttagagacccttcaactgcatggca |
484 |
Q |
| |
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|| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| || |||| ||||||||||||||||| |
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| T |
4138313 |
cttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattccgagatccttcaactgcatggca |
4138214 |
T |
|
| Q |
485 |
aggaaaagatggaaaatggagagtactaataggtgctc |
522 |
Q |
| |
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|||||| |||||||||||||| ||| | || ||||||| |
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| T |
4138213 |
aggaaaggatggaaaatggagggtaattattggtgctc |
4138176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 165 - 522
Target Start/End: Complemental strand, 4129811 - 4129460
Alignment:
| Q |
165 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaa---gttgct |
261 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||| | || |||| | |
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| T |
4129811 |
aaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttgtt |
4129712 |
T |
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| Q |
262 |
tctcaggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagc |
361 |
Q |
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||||| |||||||| ||| |||| || ||| |||||| ||| ||||||||||||| || || |||| | ||||||||||||| | ||||| |
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| T |
4129711 |
ggtcaggttcagccactatactcccaggtgaaaaacctgctat------gttgtatacagga---attgatcaaaatagacaccaagttcaaaatttagc |
4129621 |
T |
|
| Q |
362 |
tatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagttt |
461 |
Q |
| |
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||||| ||| |||| || || ||| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| || |
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| T |
4129620 |
catgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaattc |
4129521 |
T |
|
| Q |
462 |
agagacccttcaactgcatggcaaggaaaagatggaaaatggagagtactaataggtgctc |
522 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||||||| ||| | || ||||||| |
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| T |
4129520 |
cgagatccttcaactgcatggcaaggaaaggatggaaaatggagggtaattattggtgctc |
4129460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 346 - 505
Target Start/End: Complemental strand, 4118444 - 4118285
Alignment:
| Q |
346 |
aagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagt |
445 |
Q |
| |
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||||||| |||||||||| || ||| ||||| ||||| || |||| |||||| ||||||||||||||||||| ||||| || |||||| |||||| |
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| T |
4118444 |
aagttcagaacttagctataccaaagaatctaacagacgctttcttaagggaatgggaaaaacaccctcaaaatcctgtgatgactccacctactggagt |
4118345 |
T |
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| Q |
446 |
tgaagtaggtgagtttagagacccttcaactgcatggcaaggaaaagatggaaaatggag |
505 |
Q |
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||||| | | | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4118344 |
tgaagaggataactttagagacccttcaactgcatggcatggaaaagatggaaaatggag |
4118285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 4130450 - 4130402
Alignment:
| Q |
88 |
caggaccaatgtactataaaggattttaccatttcttctaccaacataa |
136 |
Q |
| |
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||||||||||||||||||||||| |||||||||| ||||||||| |||| |
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| T |
4130450 |
caggaccaatgtactataaaggagtttaccatttattctaccaatataa |
4130402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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