View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_11 (Length: 531)
Name: NF20296_low_11
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Complemental strand, 26791051 - 26790550
Alignment:
| Q |
14 |
atgaaatgacatagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26791051 |
atgaaatgacatagggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggct |
26790952 |
T |
|
| Q |
114 |
gtacgtgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790951 |
gtacgtgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgtt |
26790852 |
T |
|
| Q |
214 |
accaaaatatgatgttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790851 |
accaaaatatgatgttacattggttttattttaatatatggtgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaa |
26790752 |
T |
|
| Q |
314 |
caacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790751 |
caacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatat |
26790652 |
T |
|
| Q |
414 |
attggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgt |
513 |
Q |
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| T |
26790651 |
attggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgt |
26790552 |
T |
|
| Q |
514 |
tt |
515 |
Q |
| |
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|| |
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|
| T |
26790551 |
tt |
26790550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 26831424 - 26831263
Alignment:
| Q |
19 |
atgacatagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
118 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831424 |
atgacacagggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
26831325 |
T |
|
| Q |
119 |
tgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
180 |
Q |
| |
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||| ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||| |
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| T |
26831324 |
tgccagtctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 24 - 386
Target Start/End: Complemental strand, 26817748 - 26817385
Alignment:
| Q |
24 |
atagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
123 |
Q |
| |
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||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
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| T |
26817748 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgcta |
26817649 |
T |
|
| Q |
124 |
gtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaa-ta |
222 |
Q |
| |
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|||| |||||||||||||| |||| || | |||||| |||||||| | || || ||| |||||||| |||||||||| ||||| | |
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| T |
26817648 |
gtctggaaggatggaaattcttatacctttgtaatttagaggttccaat------ctcaaaactctcgtctctttac---atgttatgttaacaaaattt |
26817558 |
T |
|
| Q |
223 |
tgatgttacattggttttattttaatatatggtgttcttg---------gtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaa |
313 |
Q |
| |
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| ||||||||||| |||||||| |||||| | |||||||| ||||||||||||| ||||| |||||||| || ||||| |||||||||||| |
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| T |
26817557 |
taatgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaa |
26817458 |
T |
|
| Q |
314 |
caacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaa |
386 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| | |||||||||| | | ||||||||||| |
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| T |
26817457 |
caacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaa |
26817385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 26784725 - 26784554
Alignment:
| Q |
14 |
atgaaatgacatagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggct |
113 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| | | |
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| T |
26784725 |
atgaaatgacatagggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatca |
26784626 |
T |
|
| Q |
114 |
gtacgtgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaat |
185 |
Q |
| |
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|||||||| |||||| |||||||||||||| |||| ||||||||| |||||||||||||| |||||| |||| |
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| T |
26784625 |
gtacgtgcaagtctcgaaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaat |
26784554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 264 - 386
Target Start/End: Complemental strand, 26831152 - 26831030
Alignment:
| Q |
264 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
363 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || |
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| T |
26831152 |
tataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaat |
26831053 |
T |
|
| Q |
364 |
ggagattgtcacaagcaaggtaa |
386 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
26831052 |
ggagattgtcacaaacaaggtaa |
26831030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 264 - 386
Target Start/End: Complemental strand, 26784431 - 26784309
Alignment:
| Q |
264 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
363 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| |||| |
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| T |
26784431 |
tataggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattat |
26784332 |
T |
|
| Q |
364 |
ggagattgtcacaagcaaggtaa |
386 |
Q |
| |
|
||||||| |||||| |||||||| |
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| T |
26784331 |
ggagattctcacaaacaaggtaa |
26784309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 516
Target Start/End: Complemental strand, 26817353 - 26817259
Alignment:
| Q |
422 |
attataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttg |
516 |
Q |
| |
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|||||||| ||| |||| || | ||||||| |||| |||||||||| | | |||||||||||||||||||| ||||||| || |||||||||| |
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| T |
26817353 |
attataatttaacttatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttg |
26817259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 41919711 - 41919835
Alignment:
| Q |
24 |
atagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
123 |
Q |
| |
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||||||||||| || || |||||||||| |||| |||| || |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| | |||| |
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| T |
41919711 |
atagggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagcta |
41919810 |
T |
|
| Q |
124 |
gtctcaaaggatggaaattcctata |
148 |
Q |
| |
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|||||||||| ||||| ||| |||| |
|
|
| T |
41919811 |
gtctcaaagggtggaagttcttata |
41919835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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