View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_low_12 (Length: 521)
Name: NF20296_low_12
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 40834552 - 40834799
Alignment:
| Q |
1 |
ccaacccaaatggattcattcagatgctcatcctattgtcaattgtcatacatacacgtacataactcacgggatgtgctacagnnnnnnntgttgatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
40834552 |
ccaacccaaatggattcattcagatgctcatcctattgtcaattgtcatacatacacgtacgtaactcacgggatgtgctacagaaaaaaatgttgatta |
40834651 |
T |
|
| Q |
101 |
acataacatgtgtgctactctgcagattttaccattaaggtaacagttccaatgatannnnnnnncattaaaccaagtgtctgtttttatattaaaatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834652 |
acataacatgtgtgctactctgcagattttaccattaaggtaacagttctattgata----ttttcattaaaccaagtgtctgtttttatattaaaatta |
40834747 |
T |
|
| Q |
201 |
ttgcaaaaataggctgaagggccaatgtgaagtaaaaacttaaatttaaccg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834748 |
ttgcaaaaataggctgaagggccaatgtgaagtaaaaacttaaatttaaccg |
40834799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 272 - 490
Target Start/End: Original strand, 40834887 - 40835105
Alignment:
| Q |
272 |
atcggatacatattgtgtgtgattaactcaaaatcgcgataatattatcaaattgaatcatgtcagtttcttaaattattatcgatgttgttgtgtttgt |
371 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834887 |
atcggatacatattgtatgtgattaacacaataccgtgataatattatcaaattgaatcatgtcagtttcttaaattattatcgatgttgttgtgtttgt |
40834986 |
T |
|
| Q |
372 |
ccgtgtcgtgtctggtatctatgtttgggtctatggttcataaatgtttacctttggggatatttacatttacaattttacatttacatctgaatgtcct |
471 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40834987 |
ccgtgtcgtatccggtatctatgtttgggtctatggttcataaatgtttacctttggggttatttacatttacaattttacatttacatttgaatgtcct |
40835086 |
T |
|
| Q |
472 |
tcaaatatatcaattggac |
490 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40835087 |
tcaaatatatcaattggac |
40835105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 2073984 - 2073940
Alignment:
| Q |
318 |
atcaaattgaatcatgtcagtttcttaaattattatcgatgttgt |
362 |
Q |
| |
|
|||||||||||| |||| | ||||| ||||||||||||||||||| |
|
|
| T |
2073984 |
atcaaattgaattatgttattttctcaaattattatcgatgttgt |
2073940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 361
Target Start/End: Complemental strand, 16630834 - 16630794
Alignment:
| Q |
321 |
aaattgaatcatgtcagtttcttaaattattatcgatgttg |
361 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
16630834 |
aaattgaattatgtcattttcttaaattattatcggtgttg |
16630794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University