View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20296_low_15 (Length: 465)
Name: NF20296_low_15
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_15 |
 | |
|
| [»] scaffold0014 (2 HSPs) |
| | |
|
| [»] scaffold0615 (1 HSPs) |
| | |
|
| [»] scaffold0352 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 28110332 - 28110766
Alignment:
| Q |
14 |
atattacatgcatcattcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110332 |
atattacatgcatcgttcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
28110431 |
T |
|
| Q |
114 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110432 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
28110531 |
T |
|
| Q |
214 |
ggcttcttcaagtgtggttagctttgtttgtggttgtttaatctgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110532 |
ggcttcttcaagtgtggttagctttgtttgtggttgtttaatctgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttct |
28110631 |
T |
|
| Q |
314 |
atttgtttactcatcaatgcctgactagccaggacaatactattctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28110632 |
atttgtttactcatcaatgcctgactagccaggacaatactattctcattcactccaagcactcctttctcactttgctcaatctcaacataatactcat |
28110731 |
T |
|
| Q |
414 |
tctgagccatgatctcaattagggtttgaacctca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110732 |
tctgagccatgatctcaattagggtttgaacctca |
28110766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 19862924 - 19863358
Alignment:
| Q |
14 |
atattacatgcatcattcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
113 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19862924 |
atatcacatgcatcattcttttgatttttagaagtattgctaccaaaacctccccttgattatgctgccattagttttgacaactgcccaatttgagttt |
19863023 |
T |
|
| Q |
114 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
19863024 |
caaggttcttaaagtaagcttcattgttcctttgcacactttcttgatttgaatttatcacttgaaagttggtttggattaatttgatgaaactagtcaa |
19863123 |
T |
|
| Q |
214 |
ggcttcttcaagtgtggttagctttgtttgtggttgtttaatctgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttct |
313 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
19863124 |
ggcttcttcaagtgcggttggctttgattgtggttgttgaatctgttgaacttaaacttgtcttatacttatggcctgtacctgttttgaaagtgcttct |
19863223 |
T |
|
| Q |
314 |
atttgtttactcatcaatgcctgactagccaggacaatactattctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
19863224 |
atttgtttactcatcaatgcctgactagccaggataatactattctcattcacttcaagcactcctttctcactttgctcaatctcaacacaatactcat |
19863323 |
T |
|
| Q |
414 |
tctgagccatgatctcaattagggtttgaacctca |
448 |
Q |
| |
|
|| || ||||||||||||||| |||||||||||| |
|
|
| T |
19863324 |
tcaaagtcatgatctcaattagagtttgaacctca |
19863358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 170; Significance: 5e-91; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 65647 - 65434
Alignment:
| Q |
14 |
atattacatgcatcattcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
113 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
65647 |
atattacatgcgtcattcttttgagtgttggaagtattgccaccaaaacctccccttgattgtgttgccatcagttttgacaactgcccaatttgagttt |
65548 |
T |
|
| Q |
114 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
213 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
65547 |
caaggttcttaaagtaagattcattgttcctttgcacactttcttgattttattttatctcttggaagttgttttgggttaatttgatgaaactagtcaa |
65448 |
T |
|
| Q |
214 |
ggcttcttcaagtg |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
65447 |
ggcttcttcaagtg |
65434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 235 - 448
Target Start/End: Complemental strand, 64921 - 64708
Alignment:
| Q |
235 |
ctttgtttgtggttgtttaatctgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttctatttgtttactcatcaatgcc |
334 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
64921 |
ctttgtttgtggttgttgaatctgttgaacttgaacttgtcttatacttatggcttgtacctgtttcaaaagtgcttctatttgtttactcatcaaggcc |
64822 |
T |
|
| Q |
335 |
tgactagccaggacaatactattctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcattctgagccatgatctcaatta |
434 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
64821 |
tgactagcaaggataatactattctcattcactctaagcactcctatatcaccttgctcaatctcaacacaatactcattctgagccatgatctcaatta |
64722 |
T |
|
| Q |
435 |
gggtttgaacctca |
448 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
64721 |
gtgtttgaacctca |
64708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0615 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0615
Description:
Target: scaffold0615; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 465 - 228
Alignment:
| Q |
14 |
atattacatgcatcattcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
113 |
Q |
| |
|
||||||| ||| |||||||||||| |||| ||||| || |||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||| |
|
|
| T |
465 |
atattacgtgcgtcattcttttgattgttggaagtaatgtcaccaaaacctccccttgattgtgctgtcattagtttcgacaactgtccaatttgagttt |
366 |
T |
|
| Q |
114 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
213 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
365 |
caaggttcttgcgggaagcttcattgttcctttgcacactttcttgattttacttcatctcttggaagttggcttgggttaatttgatgaaactagtcaa |
266 |
T |
|
| Q |
214 |
ggcttcttcaagtgtggttagctttgtttgtggttgtt |
251 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
265 |
ggcttcttcaagtgcggttggctttgtttgtggttgtt |
228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 1934523 - 1934286
Alignment:
| Q |
14 |
atattacatgcatcattcttttgacagttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagttt |
113 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1934523 |
atattacatgcatcattcttttaattgttggaagtaatgccaccaaaacctccccttgattgtgctgccattagttttgacaactgaccaatttgagttt |
1934424 |
T |
|
| Q |
114 |
caaggttcttaaagtaagcttcattgttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaa |
213 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||| | |||||||| |||| |||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1934423 |
caaggttcttaatggaagcttcattgttcttttgtacactttcttcatttaacttcagctcttggaagttggcttgggttaatttgatgaaactagtcaa |
1934324 |
T |
|
| Q |
214 |
ggcttcttcaagtgtggttagctttgtttgtggttgtt |
251 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
1934323 |
agcttcttcaagtgcggttggctttgattgtggttgtt |
1934286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 40 - 251
Target Start/End: Original strand, 21021152 - 21021360
Alignment:
| Q |
40 |
gttgaaagtattgccaccaaaacctcccattgattgtgttgccattagttttgacaactgcccaatttgagtttcaaggttcttaaagtaagcttcattg |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
21021152 |
gttggaagtattgccaccaaaacctccccttgattgtgttgccattagttttgacaactgcccaatttaagtttcaatgttcttaaagtaagcttcatta |
21021251 |
T |
|
| Q |
140 |
ttcctttgcaaactttcttgatttgactttatctcttggaagttggtttgggttaatttgatgaaactagtcaaggcttcttcaagtgtggttagctttg |
239 |
Q |
| |
|
|| ||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||| |
|
|
| T |
21021252 |
tttctttgcacactttcttgatttgaattgatctcttggaagttggtttgggttaatttaatgaaac---tcaaggcttcttcaagtgcggtaggctttg |
21021348 |
T |
|
| Q |
240 |
tttgtggttgtt |
251 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21021349 |
tttgtggttgtt |
21021360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 446
Target Start/End: Original strand, 21021563 - 21021768
Alignment:
| Q |
241 |
ttgtggttgtttaatctgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttctatttgtttactcatcaatgcctgacta |
340 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||| ||||||||| |||||| ||| |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
21021563 |
ttgtggttggtgaatctgttgaacttgaacttgtctgatacttatgacttgtattggtttggaaagtgcttctatatgtttactcatcaaggcctgacta |
21021662 |
T |
|
| Q |
341 |
gccaggacaatactattctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcattctgagccatgatctcaattagggttt |
440 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||| ||||||||| |||| |
|
|
| T |
21021663 |
gtcatgataatactattctcattcactccaagcactcctatctcactttgctcaatctcaacacaacactcattctgagccatgaactcaattagagttt |
21021762 |
T |
|
| Q |
441 |
gaacct |
446 |
Q |
| |
|
|||||| |
|
|
| T |
21021763 |
gaacct |
21021768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 321 - 448
Target Start/End: Original strand, 1736 - 1863
Alignment:
| Q |
321 |
tactcatcaatgcctgactagccaggacaatactattctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcattctgagc |
420 |
Q |
| |
|
|||||||||| || ||||||||||| | || ||||||||||||||||| |||||||||| | ||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
1736 |
tactcatcaaggcttgactagccagcataaaactattctcattcactctaagcactcctatctcacttttctcaatctcaacacaatactcattctgagc |
1835 |
T |
|
| Q |
421 |
catgatctcaattagggtttgaacctca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1836 |
catgatctcaattagggtttgaacctca |
1863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 363 - 431
Alignment:
| Q |
257 |
tgttgaatttgaacttgtcttatacttatggcttgtacctattttgaaagtgcttctatttgtttactc |
325 |
Q |
| |
|
||||||| ||||||| || || ||| |||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
363 |
tgttgaacttgaactcgttttgtacgtatggcttgtacctgttttgaaagtgcttatatttgtttactc |
431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 257 - 448
Target Start/End: Original strand, 17843457 - 17843649
Alignment:
| Q |
257 |
tgttgaatttgaactt-gtcttatacttatggcttgtacctattttgaaagtgcttctatttgtttactcatcaatgcctgactagccaggacaatacta |
355 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||||||| |||| || ||||| || ||||||||||||||||| | |||| || |||||| || |||| |
|
|
| T |
17843457 |
tgttgaacttgaactttgtctcatacttatggcttgtaccaatttggagagtgcatccatttgtttactcatcaaggtctgattaaccaggataacacta |
17843556 |
T |
|
| Q |
356 |
ttctcattcactccaagcactcctttatcactttgctcaatctcaacataatactcattctgagccatgatctcaattagggtttgaacctca |
448 |
Q |
| |
|
|||||||||||| ||||||||| | | |||| ||| ||| |||||||| |||| ||||||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
17843557 |
ttctcattcacttcaagcactcgtatctcacattggtcagtctcaacacggtacttattctgagccatgttctaaattatggtttgaacctca |
17843649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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