View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_18 (Length: 423)

Name: NF20296_low_18
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_18
NF20296_low_18
[»] chr4 (6 HSPs)
chr4 (311-417)||(45883414-45883520)
chr4 (300-417)||(56209722-56209839)
chr4 (306-417)||(45863466-45863577)
chr4 (296-417)||(47292357-47292477)
chr4 (121-189)||(56209939-56210007)
chr4 (310-417)||(54303285-54303392)
[»] chr5 (4 HSPs)
chr5 (86-341)||(35851337-35851587)
chr5 (299-416)||(10520215-10520332)
chr5 (296-417)||(35803524-35803645)
chr5 (101-174)||(10520085-10520158)
[»] chr8 (1 HSPs)
chr8 (305-416)||(7973632-7973743)
[»] chr2 (1 HSPs)
chr2 (308-359)||(24348401-24348452)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 45883520 - 45883414
Alignment:
Q  311 caaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaactcgatg 410  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| | ||| |||||||||||||||||||||||||||||||||    
T  45883520 caaatttgcgataatttgttgaaagcagcttatgatcctcgtatttctggtgtgtatcttcaaattgacaatttaaattgcggttgggctaaactcgatg 45883421  T
Q  411 aaattcg 417  Q
    |||||||    
T  45883420 aaattcg 45883414  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 300 - 417
Target Start/End: Complemental strand, 56209839 - 56209722
Alignment:
Q  300 tatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggc 399  Q
    ||||| |||||||| ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||  |||| | | ||||||||| ||||||||    
T  56209839 tatctctgcctcaattttgcgataatatgttgaaagcagcttatgatcatcgtatttctgccgtatatcttcgtattgatactttaaattgtggttgggc 56209740  T
Q  400 taaactcgatgaaattcg 417  Q
    ||||||||||||||||||    
T  56209739 taaactcgatgaaattcg 56209722  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 306 - 417
Target Start/End: Complemental strand, 45863577 - 45863466
Alignment:
Q  306 tgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaact 405  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| | ||||||||||| ||||||||||||      
T  45863577 tgccccaaatttgagataatttgttgaaagcagcttatgatcctcgtatttctgccgtatatcttcaaattgataatttaaattgtggttgggctaaagc 45863478  T
Q  406 cgatgaaattcg 417  Q
     |||||||||||    
T  45863477 tgatgaaattcg 45863466  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 47292357 - 47292477
Alignment:
Q  296 gtattatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggtt 395  Q
    |||| |||| |||||| ||||||||||||||| |||||||| || ||||||| |||||||||||| || | |||| ||||| |   ||||||||| ||||    
T  47292357 gtatcatctctgcctcgaatttgcgataatttgttgaaagccgcatatgatcatcgtatttctgcagtgtgtcttcatatttatcgtttaaattgtggtt 47292456  T
Q  396 gggctaaactcgatgaaattcg 417  Q
    ||||||||||| ||||||||||    
T  47292457 gggctaaactc-atgaaattcg 47292477  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 56210007 - 56209939
Alignment:
Q  121 ttatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttcttgttaagctcaagac 189  Q
    ||||||||| ||||||||||||||||  |||| |||||||||||| |||||||| ||||||||||||||    
T  56210007 ttatcccactggtgacttcaatttcgtgccccataccggcttcaaaaaatttctcgttaagctcaagac 56209939  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 54303285 - 54303392
Alignment:
Q  310 tcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaactcgat 409  Q
    |||||||||||||||||| ||||||||    |||||||||||||||| || |||||||||  |||| || ||||| ||    ||||||| |||||| |||    
T  54303285 tcaaatttgcgataatttgttgaaagccatgtatgatcctcgtatttatgttgtatatctcaatatccaaaatttgaacactggttggggtaaactagat 54303384  T
Q  410 gaaattcg 417  Q
    ||||||||    
T  54303385 gaaattcg 54303392  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 86 - 341
Target Start/End: Original strand, 35851337 - 35851587
Alignment:
Q  86 tcttactcatcctcatcttcttccaatgtcaaagattatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttcttgttaagctca 185  Q
    ||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||         ||||||||||||||||||| ||||     
T  35851337 tcttactcatccttatcttcttccaatgccaaagattatcccactggtgacttcaatttcgagccc--------attcaacaaatttcttgttaggctct 35851428  T
Q  186 agacgacactggctttaccttcggaatttgttcaacacg---gaagtgtattgaaaatcaatttgcaaggtaggatatccgacgagctctcccgtacatt 282  Q
    |||| |   | |||||||| | |||   | ||||| | |   |||||||||||||||||||||||||||||| |||||||||  ||||| |   || |||    
T  35851429 agaccatggtagctttaccattggagcgttttcaatatggaagaagtgtattgaaaatcaatttgcaaggtaagatatccgatcagctcacggctatatt 35851528  T
Q  283 atgtgatcccaatgtattatctttgcctcaaatttgcgataatttcttgaaagcagctt 341  Q
    |||  || | |||||||||||| || || ||||||||||||||||||||||||| ||||    
T  35851529 atgcaattcaaatgtattatctctgtctgaaatttgcgataatttcttgaaagccgctt 35851587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 416
Target Start/End: Original strand, 10520215 - 10520332
Alignment:
Q  299 ttatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttggg 398  Q
    |||||| | ||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||| |||||| ||||  || |||||| ||| |||||||    
T  10520215 ttatctcttcctcaaatttgcggtaatttcttgaaagcagcatatgatccttgtatttccgctgtttatcttcatatcgaccatttaagttggggttggg 10520314  T
Q  399 ctaaactcgatgaaattc 416  Q
    ||||||| ||||| ||||    
T  10520315 ctaaacttgatgagattc 10520332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 417
Target Start/End: Complemental strand, 35803645 - 35803524
Alignment:
Q  296 gtattatctttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggtt 395  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||| ||  | |||||| ||||||||   ||| |||| || |    
T  35803645 gtattatctctgcctgaaatttgcgattatttcttgaaagccgcttatgatcctcgtatttccgccatttatcttcatattcactcattagattgtggct 35803546  T
Q  396 gggctaaactcgatgaaattcg 417  Q
    |||| ||| | |||||||||||    
T  35803545 gggcaaaatttgatgaaattcg 35803524  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 10520085 - 10520158
Alignment:
Q  101 tcttcttccaatgtcaaagattatcccaccggtgacttcaatttcgaaccccctaccggcttcaacaaatttct 174  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||||||||||  | ||||| ||||||||||||    
T  10520085 tcttcttccaataccgaagattaccccaccggtgacttcaatttcgaacccctcatcggctacaacaaatttct 10520158  T

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Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 305 - 416
Target Start/End: Complemental strand, 7973743 - 7973632
Alignment:
Q  305 ttgcctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctgctgtatatctttatattcacaatttaaattgcggttgggctaaac 404  Q
    ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||| ||  |||| |   |||||| ||| |||| |||||||    
T  7973743 ttgcctcaaatttgcgagaatttgttgaaagccgcttatgatcctcgtatttctgctgtgtatgttgttatttatcctttaaaatgcagttgagctaaac 7973644  T
Q  405 tcgatgaaattc 416  Q
    ||||||||||||    
T  7973643 tcgatgaaattc 7973632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 24348401 - 24348452
Alignment:
Q  308 cctcaaatttgcgataatttcttgaaagcagcttatgatcctcgtatttctg 359  Q
    |||||||| ||||| ||||| ||||||||||| ||||||||||| |||||||    
T  24348401 cctcaaatatgcgagaattttttgaaagcagcctatgatcctcgaatttctg 24348452  T

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