View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_2 (Length: 677)

Name: NF20296_low_2
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_2
NF20296_low_2
[»] chr1 (12 HSPs)
chr1 (17-662)||(11027631-11028276)
chr1 (17-163)||(11008169-11008322)
chr1 (17-164)||(10915030-10915184)
chr1 (17-163)||(11011331-11011484)
chr1 (161-288)||(11004396-11004525)
chr1 (17-164)||(10983955-10984109)
chr1 (17-257)||(11033622-11033886)
chr1 (547-608)||(11042566-11042627)
chr1 (161-214)||(10984121-10984176)
chr1 (161-257)||(10915196-10915294)
chr1 (24-161)||(11004540-11004684)
chr1 (428-528)||(10984344-10984444)


Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 17 - 662
Target Start/End: Complemental strand, 11028276 - 11027631
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgatagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11028276 cattaagatggtgaatcctaccaatggtagcaatttcattgatagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcga 11028177  T
Q  117 agttgtcctttgaaaacagacccataaactccacttcctagttttgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcac 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||||||| | |||||||||||||||||||||||||||||||    
T  11028176 agttgtcctttgaaaacagacccataacctccacttcctagttttgttatcttatttatgtctttgaagaagtaccttattggcatgatgctattgtcac 11028077  T
Q  215 ggcgtagaaaactttcgatgccgttgtacattgataaatgttttggtcgagttttgtaaattaaaaatccaataaatgatgctccaagaacaaatataac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  11028076 ggcgtagaaaactttcgatgccgttgtacattgataaatgttttggtcgagttttgtaaattaaaaatccaataaatgatgcaccaagaacgaatataac 11027977  T
Q  315 tgcgtcaagaaaaattaacaatgacgaacaaacctatttttgaaggaaataatgaacaaacctagctataaagaaatggaaataagagaaaggaannnnn 414  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||         
T  11027976 tgcgtcaagaaaaattaacaatgacgaacaaacct-tttttgaaggaaataatgaacaaacctagctattaagaaatggaaatgagagaaaggaa--att 11027880  T
Q  415 nnnnnnnnctcaggaaaatgaaattattataaacttgattatttattattttttgtttagaatataacgaagtgaaaatt-aaaaatatgatgctatata 513  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  11027879 atttttttctcaggaaaatgaaattattataaacttgattatttattattttttgtttagaacataacgaagtgaaaattgaaaaatatgatgcgatata 11027780  T
Q  514 tttctaatcaatatactccacttcatgaaagacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttccttt 613  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11027779 tttctaatcaatatattccacttaatgaatgacttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcattttttccttt 11027680  T
Q  614 tccatctgatgagaaggcacaaaacctgagatttgtaggttaacaagat 662  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  11027679 tccatctgatgagaaggcacagaacctgagatttggaggttaacaagat 11027631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 11008169 - 11008322
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagcc 109  Q
    |||||| |||||||||||||||||||||||||| |||||||| |       || ||| ||||||||   ||||||||||||| ||||||||||| |  ||    
T  11008169 cattaacatggtgaatcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggcactgtccaataatttgactgctacaagacgacc 11008268  T
Q  110 atttcgaagttgtcctttgaaaacagacccataaactccacttcctagttttgt 163  Q
    | ||||||||||||||||||||||||| |||||| ||||| | |||||||||||    
T  11008269 acttcgaagttgtcctttgaaaacagatccataacctccattgcctagttttgt 11008322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10915030 - 10915184
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagcc 109  Q
    |||||| ||||||||||||||| |||||  ||| ||||||||||       |||||| |||||||| ||||||||||||||| ||||||||||| |  ||    
T  10915030 cattaacatggtgaatcctaccgatggtgacaacttcattgataaaatcttgaccgttggacttggctttgtccaataatttaactgctacaagacgacc 10915129  T
Q  110 atttcgaagttgtcctttgaaaacagacccataaactccacttcctagttttgtt 164  Q
    | || |||||||||||||||||||||| |||||| ||||| | |||| |||||||    
T  10915130 actttgaagttgtcctttgaaaacagatccataacctccattgcctaattttgtt 10915184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 11011331 - 11011484
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagcc 109  Q
    |||||| |||||||||||||||||||||||||| |||||||| |       || |   |||||||| ||||||||||||||| ||||||||||| |  ||    
T  11011331 cattaacatggtgaatcctaccaatggtagcaacttcattgacaaaatcttgatcactggacttggctttgtccaataatttgactgctacaagacgacc 11011430  T
Q  110 atttcgaagttgtcctttgaaaacagacccataaactccacttcctagttttgt 163  Q
    | ||||||||||||||||||||||||| |||||  ||||| | |||||||||||    
T  11011431 acttcgaagttgtcctttgaaaacagatccataccctccattgcctagttttgt 11011484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 11004525 - 11004396
Alignment:
Q  161 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcacggcgtagaaaactttcgatgccgttgtacattgataaatgtttt 258  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||| |||| ||||||||||  ||||||||| |  ||||  ||||||||||||    
T  11004525 tgttatcttttttatgtctttgtaagagtaccttataggcatgatgctattatcactgcgtagaaaatcttcgatgccatcatacacagataaatgtttt 11004426  T
Q  259 ggtcgagttttgtaaattaaaaatccaata 288  Q
     ||||   |||||| ||||| ||| |||||    
T  11004425 tgtcgccatttgtagattaataatacaata 11004396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 10983955 - 10984109
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagcc 109  Q
    |||||| |||||||||||||||||||||  ||| |||||||||        |||| | |||||||| ||||||||||||||| ||||||||||| || ||    
T  10983955 cattaacatggtgaatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaacc 10984054  T
Q  110 atttcgaagttgtcctttgaaaacagacccataaactccacttcctagttttgtt 164  Q
      |||| ||||||||||| |||||||  |||||| ||||| | |||| |||||||    
T  10984055 gcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgtt 10984109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 11033622 - 11033886
Alignment:
Q  17 cattaagatggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagcc 109  Q
    |||||| |||||| ||||||||||||||||||| |||||||| |       || ||| |||||||| | | ||||||||||| |||||||| || |  ||    
T  11033622 cattaacatggtggatcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgacc 11033721  T
Q  110 atttcgaagttgtcctttgaaaacagacccataaactccacttcctagttttgt---------------tatctttttt--gtctttgtaaaagtacctt 192  Q
    | |||||||||||||||| ||||| || |||||| ||||| | |||||||||||               |||| |||||  |||||||||| | |||||     
T  11033722 acttcgaagttgtcctttaaaaacggatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaataccta 11033821  T
Q  193 attggcatgatgctattgtcacggcgtagaaaactttcgatgccgttgtacattgataaatgttt 257  Q
    || |||||||||||||||||||  |||||||||  ||||||||| |  |||||||||| ||||||    
T  11033822 ataggcatgatgctattgtcactacgtagaaaatcttcgatgccatcatacattgatagatgttt 11033886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 608
Target Start/End: Complemental strand, 11042627 - 11042566
Alignment:
Q  547 ttgatctactgagagagttttatgggagtttgtgttttactgacacgactctttcatttttt 608  Q
    |||||||||||| ||||||||||||| |||| ||||||||| ||| |||| |||||||||||    
T  11042627 ttgatctactgacagagttttatgggtgtttctgttttactaacatgactatttcatttttt 11042566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 10984121 - 10984176
Alignment:
Q  161 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcac 214  Q
    |||||||||||||  |||||||||| |||||||||| |||||||||||||||||||    
T  10984121 tgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcac 10984176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 161 - 257
Target Start/End: Original strand, 10915196 - 10915294
Alignment:
Q  161 tgttatctttttt--gtctttgtaaaagtaccttattggcatgatgctattgtcacggcgtagaaaactttcgatgccgttgtacattgataaatgttt 257  Q
    |||||||||||||  |||||||||| |||||||||| ||||||||| |||||||||  ||||||||   ||||| |||||  ||||| || ||||||||    
T  10915196 tgttatcttttttatgtctttgtaagagtaccttataggcatgatgttattgtcacttcgtagaaagtcttcgacgccgtcatacatagagaaatgttt 10915294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 11004684 - 11004540
Alignment:
Q  24 atggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcga 116  Q
    ||||||||||||||||||||||| || |||||||| |       |||||| || ||||| ||||||||||||||| || |||||||| |   || |||||    
T  11004684 atggtgaatcctaccaatggtagtaacttcattgacaaaatcttgaccgttggtcttggctttgtccaataatttgaccgctacaagacgatcacttcga 11004585  T
Q  117 agttgtcctttgaaaacagacccataaactccacttcctagtttt 161  Q
    |||| |||||| |||||||  |||||| ||||  | |||||||||    
T  11004584 agttttcctttaaaaacagttccataacctccgttgcctagtttt 11004540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 528
Target Start/End: Original strand, 10984344 - 10984444
Alignment:
Q  428 gaaaatgaaattattataaacttgattatttattattttttgtttagaatataacgaagtgaaaatt-aaaaatatgatgctatatatttctaatcaata 526  Q
    ||||||||| |||| |||||||| ||||||||  ||| | | ||| ||| |||  ||||| |||||| ||||||||||||||||||||||| ||||||||    
T  10984344 gaaaatgaagttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaatatgatgctatatatttc-aatcaata 10984442  T
Q  527 ta 528  Q
    ||    
T  10984443 ta 10984444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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