View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_21 (Length: 418)
Name: NF20296_low_21
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 32867416 - 32867029
Alignment:
| Q |
16 |
atgtgggaaaaaggtgaatcatataccttttgtttgttattcaagaccatggcctcagttattagcattatttgttctgtaagggaatgcaacttgacca |
115 |
Q |
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| T |
32867416 |
atgtgggaaaaaggtgaatcatataccttttgtttgttattcaagaccatggcctcagttattagcattatttgttctgtaagggaatgcaacttgacca |
32867317 |
T |
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| Q |
116 |
tgctcaatgcgcctaacatcttctttgaggatctcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttatctg |
215 |
Q |
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| T |
32867316 |
tgctcaatgcgcctaacatcttctttgaggatttcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttatctg |
32867217 |
T |
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| Q |
216 |
gagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttggagtccaagttgatcccatttcaagaacaagatgagcttaatttag |
315 |
Q |
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| T |
32867216 |
gagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttggagtccaagttgatcccatttcaagaacaagatgagcttaatttag |
32867117 |
T |
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| Q |
316 |
aaaaattgtataagaaagttctttaggaaaatggaactatcttggttaattggttttcacaaataggaaaaggaagagaggaagaaat |
403 |
Q |
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| T |
32867116 |
aaaaattgtataagaaagttctttaggaaaatggaactatcttggttaattggttttcacaaataggaaaaggaagagaggaagaaat |
32867029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 32880465 - 32880300
Alignment:
| Q |
113 |
ccatgctcaatgcgcctaacatcttctttgaggatctcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttat |
212 |
Q |
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| T |
32880465 |
ccatgctcaatacgttgaacatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatcttt |
32880366 |
T |
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| Q |
213 |
ctggagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttggagtccaag |
278 |
Q |
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| |||| |||||||||||||| |||||| ||| |||||| ||||||| ||||||| |||||||| |
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| T |
32880365 |
caggagtttctctatcatataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaag |
32880300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 32885292 - 32885127
Alignment:
| Q |
113 |
ccatgctcaatgcgcctaacatcttctttgaggatctcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttat |
212 |
Q |
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| T |
32885292 |
ccatgctcaatacgttgaacatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatcttt |
32885193 |
T |
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| Q |
213 |
ctggagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttggagtccaag |
278 |
Q |
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| T |
32885192 |
caggagtttccctgtcatataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaag |
32885127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 32899335 - 32899170
Alignment:
| Q |
113 |
ccatgctcaatgcgcctaacatcttctttgaggatctcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccacttat |
212 |
Q |
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| T |
32899335 |
ccatgctcaatacgttgaacatcttctttgaggatctcatagtgactcttaacatcttcaactgattttccaaccactttggccacattgtgccatcttt |
32899236 |
T |
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| Q |
213 |
ctggagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttggagtccaag |
278 |
Q |
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| T |
32899235 |
caggagtttccctgtcatataaagccaatgcttgttcaaacagtttgttctgccttgcagtccaag |
32899170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 7858929 - 7859086
Alignment:
| Q |
112 |
accatgctcaatgcgcctaacatcttctttgaggatctcataatgccttttaacatcttcaactgattttcccaccatgttggcaacattctgccactta |
211 |
Q |
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|||| ||||||||||| | | ||| |||||||| |||||||| |||||||||||||| ||||| |||||||| |||| || || ||||| |||||| | |
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| T |
7858929 |
accacgctcaatgcgcttgatatcctctttgagtatctcatagtgccttttaacatcctcaacagattttccgaccactttagccacattgtgccacctg |
7859028 |
T |
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| Q |
212 |
tctggagattctctatcatatatagccaaagctctttcaaattgtttgttttgccttg |
269 |
Q |
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| T |
7859029 |
tcaggtgtttccctatcatatatagcaagtgcctcttcaaatagtttgttttgccttg |
7859086 |
T |
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