View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_23 (Length: 390)
Name: NF20296_low_23
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 4143273 - 4142915
Alignment:
| Q |
13 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttct |
112 |
Q |
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| T |
4143273 |
aaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaagttgcttct |
4143174 |
T |
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| Q |
113 |
caggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctat |
212 |
Q |
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| T |
4143173 |
caggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatacttagctat |
4143074 |
T |
|
| Q |
213 |
gccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttaga |
312 |
Q |
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| T |
4143073 |
gccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagtttaga |
4142974 |
T |
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| Q |
313 |
gacccttcaactgcatggcaaggaaaagatggaaaatggagagtactaataggtgctcg |
371 |
Q |
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| T |
4142973 |
gacccttcaactgcatggcaaggaaaagatggaaaatggagagtactgataggtgctcg |
4142915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 4129813 - 4129460
Alignment:
| Q |
11 |
agaaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaa---gttg |
107 |
Q |
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| T |
4129813 |
agaaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttg |
4129714 |
T |
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| Q |
108 |
cttctcaggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatactta |
207 |
Q |
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| T |
4129713 |
ttggtcaggttcagccactatactcccaggtgaaaaacctgctat------gttgtatacagga---attgatcaaaatagacaccaagttcaaaattta |
4129623 |
T |
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| Q |
208 |
gctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagt |
307 |
Q |
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|| ||||| ||| |||| || || ||| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| | |
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| T |
4129622 |
gccatgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaat |
4129523 |
T |
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| Q |
308 |
ttagagacccttcaactgcatggcaaggaaaagatggaaaatggagagtactaataggtgctc |
370 |
Q |
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| T |
4129522 |
tccgagatccttcaactgcatggcaaggaaaggatggaaaatggagggtaattattggtgctc |
4129460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 370
Target Start/End: Complemental strand, 4138529 - 4138176
Alignment:
| Q |
11 |
agaaaatggtatggggtcattcaatatccaaagatctcataaattggactcatttgaatcatgctattgaaccaacttgtgctggtgaaacaa---gttg |
107 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||| | || |||| |
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| T |
4138529 |
agaaaatggtatggggtcattctatatcaaatgatctcataaattggactcatctaaatgatgctattgtaccaactatacctggtgacataaacagttg |
4138430 |
T |
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| Q |
108 |
cttctcaggctcagccacaatagtccctggagaacaacctgttatatatatgttgtatacaggattaatcaatgaaaaaacacaccaagttcaatactta |
207 |
Q |
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| T |
4138429 |
ttggtcaggttcagccactatactcccaggtgaaaaacctgctat------gttgtatacagga---attgatcaaaatagacaccaagttcaaaattta |
4138339 |
T |
|
| Q |
208 |
gctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagttgaagtaggtgagt |
307 |
Q |
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|| ||||| ||| |||| || || ||| | |||| |||||| |||||| |||||||||||||||||| || |||||| |||||||||||| ||||| | |
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| T |
4138338 |
gccatgccaaagaatctgtctgatccttacttaagggaatgggaaaaacatcctcaaaatcctttgatgactccacctagtggagttgaagtcggtgaat |
4138239 |
T |
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| Q |
308 |
ttagagacccttcaactgcatggcaaggaaaagatggaaaatggagagtactaataggtgctc |
370 |
Q |
| |
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| |||| ||||||||||||||||||||||| |||||||||||||| ||| | || ||||||| |
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| T |
4138238 |
tccgagatccttcaactgcatggcaaggaaaggatggaaaatggagggtaattattggtgctc |
4138176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 194 - 353
Target Start/End: Complemental strand, 4118444 - 4118285
Alignment:
| Q |
194 |
aagttcaatacttagctatgccgaaggatctatcagaccctaagttaatagaatggataaaacaccctcaaaatcctttgatggctgcacctaatggagt |
293 |
Q |
| |
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||||||| |||||||||| || ||| ||||| ||||| || |||| |||||| ||||||||||||||||||| ||||| || |||||| |||||| |
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| T |
4118444 |
aagttcagaacttagctataccaaagaatctaacagacgctttcttaagggaatgggaaaaacaccctcaaaatcctgtgatgactccacctactggagt |
4118345 |
T |
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| Q |
294 |
tgaagtaggtgagtttagagacccttcaactgcatggcaaggaaaagatggaaaatggag |
353 |
Q |
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||||| | | | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4118344 |
tgaagaggataactttagagacccttcaactgcatggcatggaaaagatggaaaatggag |
4118285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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