View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_24 (Length: 387)
Name: NF20296_low_24
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_24 |
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| [»] scaffold0018 (3 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 150048 - 149662
Alignment:
| Q |
1 |
acttgtgaaattgttatggatgttaaacttgcggtgaaactatttgtcactatgaaaatagcaaataaccatggtgtgagtacaacttgagccaatggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
150048 |
acttgtgaaattgttatggatgttaaacttgctgtgaaactatttgttacaatgaaaatagcaaataaccatggtgttagtacaacttgagccaatggtc |
149949 |
T |
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| Q |
101 |
ttcttattggttctcctacatattgaaaattgaagatgaatcaagaattagaactttgttttacttaaataaacatgctcaaatttcatgttagatgact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
149948 |
ttcttattggttctcctacatattgaaaattgaagatgaatcaagaattagaactttgttttagttaaataaacatgctcaaatttcatgttagatgact |
149849 |
T |
|
| Q |
201 |
tactgtgtgcataaaatagtacaattactaaaaaccaaagcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataacaat |
300 |
Q |
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| T |
149848 |
tactgtgtgcataaaatagtacagtgactaaaaaccaaagcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataacaac |
149749 |
T |
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| Q |
301 |
tcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaagcatccaaaaacatccatgtttgtttcgatttttc |
387 |
Q |
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| T |
149748 |
tcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaggcatccaaaaacatccatgtttgttttgatttttc |
149662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 387
Target Start/End: Complemental strand, 141670 - 141480
Alignment:
| Q |
197 |
gacttactgtgtgcataaaatagtacaattactaaaaaccaaagcatagacctaaatccccttagatatggattagcttccctttcaatcaaccaaataa |
296 |
Q |
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| T |
141670 |
gacttactgtgtgcataaaatagtacagtgactaaaaaccaaagcatagaccctaatccctttagatcttcatttacttctctttcaatcagccaaataa |
141571 |
T |
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| Q |
297 |
caattcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaagcatccaaaaacatccatgtttgtttcgatttttc |
387 |
Q |
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| T |
141570 |
caaatccaagaaaaatatgcatagctatcatcatcagccacatctcttttttaaaggcatgcaaaaacatccatgtttctttcgatttttc |
141480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 141906 - 141780
Alignment:
| Q |
1 |
acttgtgaaattgttatggatgttaaacttgcggtgaaactatttgtcactatgaaaatagcaaataaccatggtgtgagtacaacttgagccaatggtc |
100 |
Q |
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||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| || |||||| | || || |||| |
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| T |
141906 |
acttgtgaaatagttatggatgtcaaacttgccgtgaaactatttgtcacaatgaaaatagcaaagaaccatggtgtcagcacaactcgtgctaagggtc |
141807 |
T |
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| Q |
101 |
ttcttattggttctcctacatattgaa |
127 |
Q |
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| T |
141806 |
ttcttattggttctcctgcatattgaa |
141780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 186 - 385
Target Start/End: Complemental strand, 24898627 - 24898428
Alignment:
| Q |
186 |
tcatgttagatgacttactgtgtgcataaaatagtacaattactaaaaaccaaagcatagacctaaatccccttagatatggattagcttccctttcaat |
285 |
Q |
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|||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||| || | ||| ||||| |||| ||| |||||||||| |||||| |
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| T |
24898627 |
tcatgttagacaacttactatgtgcataaaatagtactgtgactaaaaaccaaagcatcgatccaaaacccctaagatctgggttagcttcccgttcaat |
24898528 |
T |
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| Q |
286 |
caaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaagcatccaaaaacatccatgtttgtttcgatttt |
385 |
Q |
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| T |
24898527 |
caaccaaataacaacacctacaaaaatatgcatagctgctatcatcagccacatctcttttgtaaaggcatccaaaaacatccatgtttcttttgatttt |
24898428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 160 - 385
Target Start/End: Complemental strand, 24910755 - 24910530
Alignment:
| Q |
160 |
tttacttaaataaacatgctcaaatttcatgttagatgacttactgtgtgcataaaatagtacaattactaaaaaccaaagcatagacctaaatcccctt |
259 |
Q |
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|||||| ||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||| || | || ||||| |
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| T |
24910755 |
tttactcaaataaacatgttcagtcttcatgttagaggacttactatgtgcataaaatagtactgtgactaaaaaccaaagcatcgatccgaaaccccta |
24910656 |
T |
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| Q |
260 |
agatatggattagcttccctttcaatcaaccaaataacaattcctacaaaaatatgcattgatgttatcatcaaccacatctcttttgtaaaagcatcca |
359 |
Q |
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|||| ||| |||||||||| |||||||||||||||||||| ||||||||||||||| | | || |||||||| |||||||||||| ||||| ||||||| |
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| T |
24910655 |
agatctgggttagcttcccgttcaatcaaccaaataacaacacctacaaaaatatgcgtagctgctatcatcagccacatctctttcgtaaaggcatcca |
24910556 |
T |
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| Q |
360 |
aaaacatccatgtttgtttcgatttt |
385 |
Q |
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| T |
24910555 |
aaaacatccatgtttcttttgatttt |
24910530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24899043 - 24898914
Alignment:
| Q |
1 |
acttgtgaaattgttatggatgttaaacttgcggtgaaactatttgtcactatgaaaatagcaaataaccatggtgtgagtacaacttgagccaatggtc |
100 |
Q |
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||||| ||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
24899043 |
acttgcgaaatagttattgatgtcaaacttgctgtgaaactatttgtcacaatgaaaatagcaaataaccatggtgtcagtacaacttgagctaatggtt |
24898944 |
T |
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| Q |
101 |
ttcttattggttctcctacatattgaaaat |
130 |
Q |
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||||||||||||||||| |||||| ||||| |
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| T |
24898943 |
ttcttattggttctcctgcatattaaaaat |
24898914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 24911204 - 24911075
Alignment:
| Q |
1 |
acttgtgaaattgttatggatgttaaacttgcggtgaaactatttgtcactatgaaaatagcaaataaccatggtgtgagtacaacttgagccaatggtc |
100 |
Q |
| |
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||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| || || |||||||| ||||| |||||| |
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| T |
24911204 |
acttgtgaaatagttatggatgtcaaacttgctgtgaaactatttgtcacaatgaaaatagcaaataaccagggcgtcagtacaacctgagctaatggtt |
24911105 |
T |
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| Q |
101 |
ttcttattggttctcctacatattgaaaat |
130 |
Q |
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||||||||||||||||| |||||||||||| |
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| T |
24911104 |
ttcttattggttctcctgcatattgaaaat |
24911075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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