View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_25 (Length: 382)
Name: NF20296_low_25
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 28 - 338
Target Start/End: Complemental strand, 22570230 - 22569906
Alignment:
| Q |
28 |
atcacaagtttcttccaccgaagatgatcctatttgaggcaccaccaaacatcaaacatagacac-tctcaacgaaaattttaacattagtttgccata- |
125 |
Q |
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| T |
22570230 |
atcacaagtttcttccaccgaagatgatcctatttgaggcaccaccaaacatcaaacatagacacctctcaacgaaaattttaacattagtttgccatat |
22570131 |
T |
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| Q |
126 |
------------gactcttccggtaactttccgatgatttttaaaaaaggagaaaatcaagcttcaatagaaatactacagccttatatcaaaacctcaa |
213 |
Q |
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| T |
22570130 |
tatgagagattagactcttccggtaactttccgatgatttttaaaaaaggagaaaatcaagcttcaatagaaatactacagccttatatcaaaacctcaa |
22570031 |
T |
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| Q |
214 |
aatgtaacagaacaattatgtgaaattgtactatttttgaaggtaactccgaagtgaacctaacaaaaccaatgaagcattaaacagtatcaggcatatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22570030 |
aatgtaacagaacaattatgtgaaattgtactatttttgaaggtaactccgaagtgaacctaacaaaaccaatgaagcattaagcagtatcaggcatatt |
22569931 |
T |
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| Q |
314 |
aattaagcagatttattctttcaga |
338 |
Q |
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||||||||||||||||||||||||| |
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| T |
22569930 |
aattaagcagatttattctttcaga |
22569906 |
T |
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