View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_26 (Length: 374)
Name: NF20296_low_26
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 38760609 - 38760738
Alignment:
| Q |
53 |
atgtttttgtggttcgacggtgggcttatatataaaaagaaagcacttaattcatttatgcttgagggt--gagaggtctagaataaaccataccttaat |
150 |
Q |
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| T |
38760609 |
atgtttttgtggttcgacggtgggcttatatataaaaagaaaacactta----atttatgcttgagggtgagagaggtctagaataaaccataccttaat |
38760704 |
T |
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| Q |
151 |
tttaat---tttaatttttaaaaacttggtattc |
181 |
Q |
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| T |
38760705 |
ttttttttattttttttttaaaaacttggtattc |
38760738 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 38761473 - 38761537
Alignment:
| Q |
180 |
tctacaaacaagttttaaaatgaggttaaaagagtaaatatgattaattaatcatgtaaataatta |
245 |
Q |
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| T |
38761473 |
tctacaaacaagttttaaa-tgaggttaaaagagtaaatatgattaattaatcatgtaaataatta |
38761537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 38761605 - 38761655
Alignment:
| Q |
313 |
gaatattatatttcatttaaaagaaattaacgagatatgatttatagaatt |
363 |
Q |
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| T |
38761605 |
gaatattatatttcatttaaaagaaattaacgagatatgatttatagaatt |
38761655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 38759613 - 38759656
Alignment:
| Q |
18 |
gctttgttgatggaggttttgaccagaatccacaaatgtttttg |
61 |
Q |
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| T |
38759613 |
gctttgttgatggaggttttgaccagaatccacagatgtttttg |
38759656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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