View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20296_low_27 (Length: 373)

Name: NF20296_low_27
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20296_low_27
NF20296_low_27
[»] chr4 (31 HSPs)
chr4 (1-357)||(36513724-36514085)
chr4 (89-172)||(37306898-37306981)
chr4 (89-171)||(38675162-38675247)
chr4 (129-173)||(46779301-46779345)
chr4 (131-173)||(37306626-37306668)
chr4 (99-152)||(37306897-37306950)
chr4 (129-173)||(5289712-5289756)
chr4 (73-121)||(33659788-33659836)
chr4 (129-173)||(36712061-36712105)
chr4 (89-153)||(48088042-48088105)
chr4 (129-172)||(9968312-9968355)
chr4 (73-128)||(33659841-33659895)
chr4 (129-172)||(39294184-39294227)
chr4 (129-172)||(42013157-42013200)
chr4 (89-128)||(43635905-43635944)
chr4 (129-172)||(50038536-50038579)
chr4 (129-172)||(50045758-50045801)
chr4 (129-171)||(17028319-17028361)
chr4 (129-171)||(23329382-23329424)
chr4 (129-171)||(30162623-30162665)
chr4 (129-171)||(32112400-32112442)
chr4 (129-175)||(33379484-33379530)
chr4 (129-187)||(43087436-43087494)
chr4 (129-171)||(51975210-51975252)
chr4 (73-118)||(41789000-41789044)
chr4 (89-122)||(48042666-48042699)
chr4 (129-173)||(37252114-37252158)
chr4 (89-121)||(39754131-39754163)
chr4 (129-173)||(53551681-53551725)
chr4 (89-121)||(56420507-56420539)
chr4 (129-173)||(56420517-56420561)
[»] chr2 (43 HSPs)
chr2 (73-187)||(35607432-35607544)
chr2 (129-173)||(10041628-10041672)
chr2 (129-173)||(25668421-25668465)
chr2 (129-171)||(30905210-30905252)
chr2 (125-175)||(34240913-34240963)
chr2 (73-118)||(32070478-32070522)
chr2 (73-118)||(40739571-40739615)
chr2 (129-173)||(324806-324850)
chr2 (129-173)||(10099638-10099682)
chr2 (129-173)||(29712497-29712541)
chr2 (129-173)||(32473557-32473601)
chr2 (129-173)||(42579029-42579073)
chr2 (89-128)||(9709690-9709729)
chr2 (129-172)||(27743702-27743745)
chr2 (129-172)||(28602233-28602276)
chr2 (82-128)||(85753-85799)
chr2 (129-171)||(5144354-5144396)
chr2 (73-131)||(5204986-5205043)
chr2 (129-187)||(9709654-9709712)
chr2 (129-171)||(17844037-17844079)
chr2 (129-171)||(27327842-27327884)
chr2 (129-171)||(34466110-34466152)
chr2 (129-171)||(41145276-41145318)
chr2 (73-127)||(42142011-42142064)
chr2 (129-171)||(43514768-43514810)
chr2 (131-173)||(45123883-45123925)
chr2 (73-118)||(27902333-27902378)
chr2 (73-122)||(37980608-37980656)
chr2 (73-118)||(38262009-38262053)
chr2 (73-121)||(921892-921939)
chr2 (129-173)||(4898175-4898219)
chr2 (129-173)||(4898251-4898295)
chr2 (129-173)||(4945569-4945613)
chr2 (129-173)||(4945645-4945689)
chr2 (129-161)||(8365958-8365990)
chr2 (133-173)||(12440720-12440760)
chr2 (89-121)||(24971281-24971313)
chr2 (89-121)||(30202560-30202592)
chr2 (89-121)||(33150107-33150139)
chr2 (89-121)||(34466130-34466162)
chr2 (129-173)||(36490565-36490609)
chr2 (129-173)||(37485982-37486026)
chr2 (129-173)||(37486085-37486129)
[»] chr1 (18 HSPs)
chr1 (89-171)||(17988254-17988332)
chr1 (129-171)||(40237621-40237663)
chr1 (129-187)||(52880001-52880059)
chr1 (127-168)||(13145746-13145787)
chr1 (129-173)||(4838321-4838365)
chr1 (129-173)||(47011254-47011298)
chr1 (124-171)||(26059200-26059247)
chr1 (129-172)||(34061954-34061997)
chr1 (129-171)||(15278577-15278619)
chr1 (77-118)||(12993545-12993585)
chr1 (89-118)||(46590871-46590900)
chr1 (73-118)||(52879994-52880038)
chr1 (129-173)||(4838395-4838439)
chr1 (129-173)||(5753193-5753237)
chr1 (129-173)||(34332958-34333002)
chr1 (129-173)||(40341740-40341784)
chr1 (89-121)||(40341762-40341794)
chr1 (78-118)||(47293271-47293311)
[»] scaffold0635 (1 HSPs)
scaffold0635 (129-173)||(5398-5442)
[»] chr5 (33 HSPs)
chr5 (129-173)||(6638350-6638394)
chr5 (129-173)||(37554357-37554401)
chr5 (73-173)||(11784302-11784416)
chr5 (129-187)||(40208563-40208621)
chr5 (89-122)||(20503304-20503337)
chr5 (129-173)||(9246972-9247016)
chr5 (129-173)||(18941996-18942040)
chr5 (129-173)||(37637279-37637323)
chr5 (129-173)||(37684980-37685024)
chr5 (129-172)||(9247048-9247091)
chr5 (129-172)||(14064821-14064864)
chr5 (73-128)||(24433604-24433658)
chr5 (132-171)||(36792677-36792716)
chr5 (129-172)||(43585506-43585549)
chr5 (129-171)||(8409749-8409791)
chr5 (129-171)||(15385830-15385872)
chr5 (129-171)||(15385896-15385938)
chr5 (129-171)||(15965968-15966010)
chr5 (129-171)||(21152600-21152642)
chr5 (129-171)||(21159735-21159777)
chr5 (129-171)||(21163542-21163584)
chr5 (129-171)||(21163616-21163658)
chr5 (129-171)||(33696648-33696690)
chr5 (129-171)||(36346801-36346843)
chr5 (129-171)||(36441179-36441221)
chr5 (129-173)||(7336941-7336985)
chr5 (129-173)||(19784483-19784527)
chr5 (129-173)||(20367318-20367362)
chr5 (89-121)||(20503265-20503297)
chr5 (129-173)||(27304823-27304867)
chr5 (89-121)||(35067951-35067983)
chr5 (129-161)||(35172452-35172484)
chr5 (129-161)||(40208499-40208531)
[»] chr8 (17 HSPs)
chr8 (129-172)||(34188404-34188447)
chr8 (129-171)||(7256973-7257015)
chr8 (73-129)||(10150886-10150941)
chr8 (124-172)||(29110275-29110323)
chr8 (129-173)||(40802213-40802257)
chr8 (99-171)||(5039027-5039101)
chr8 (89-128)||(34194629-34194668)
chr8 (129-187)||(1875684-1875742)
chr8 (129-171)||(8568832-8568874)
chr8 (131-173)||(29450867-29450909)
chr8 (129-171)||(34188330-34188372)
chr8 (131-173)||(35969750-35969792)
chr8 (131-172)||(32241759-32241800)
chr8 (73-118)||(41177975-41178019)
chr8 (88-128)||(15754466-15754506)
chr8 (129-173)||(35969672-35969716)
chr8 (129-173)||(35972381-35972425)
[»] chr7 (22 HSPs)
chr7 (90-172)||(31671011-31671091)
chr7 (88-170)||(46774543-46774624)
chr7 (129-171)||(47682740-47682782)
chr7 (129-172)||(13846721-13846764)
chr7 (89-128)||(19532022-19532061)
chr7 (129-172)||(32389241-32389284)
chr7 (129-172)||(36711625-36711668)
chr7 (129-172)||(45833201-45833244)
chr7 (89-128)||(46578334-46578373)
chr7 (129-171)||(3498380-3498422)
chr7 (129-171)||(17882720-17882762)
chr7 (129-171)||(27942411-27942453)
chr7 (129-171)||(33784072-33784114)
chr7 (129-171)||(46477219-46477261)
chr7 (129-171)||(48590671-48590713)
chr7 (73-118)||(33471569-33471613)
chr7 (73-121)||(10595508-10595555)
chr7 (88-128)||(18732243-18732283)
chr7 (129-173)||(22332307-22332351)
chr7 (129-161)||(46221100-46221132)
chr7 (129-161)||(48392952-48392984)
chr7 (129-173)||(48590595-48590639)
[»] chr3 (17 HSPs)
chr3 (129-171)||(21659150-21659192)
chr3 (129-173)||(19679048-19679092)
chr3 (129-173)||(51256577-51256621)
chr3 (129-172)||(22995782-22995825)
chr3 (129-171)||(39289572-39289615)
chr3 (129-171)||(32833692-32833734)
chr3 (129-171)||(50623058-50623100)
chr3 (73-118)||(7933535-7933579)
chr3 (73-118)||(40504083-40504127)
chr3 (73-122)||(40760788-40760836)
chr3 (131-175)||(24599887-24599931)
chr3 (129-173)||(26043336-26043380)
chr3 (131-171)||(42595740-42595780)
chr3 (89-121)||(43333951-43333983)
chr3 (89-121)||(47931765-47931797)
chr3 (89-121)||(54680565-54680597)
chr3 (90-122)||(54985556-54985588)
[»] scaffold0070 (1 HSPs)
scaffold0070 (129-173)||(42650-42694)
[»] scaffold0019 (1 HSPs)
scaffold0019 (129-173)||(45531-45575)
[»] chr6 (8 HSPs)
chr6 (89-128)||(31577508-31577547)
chr6 (131-172)||(5301928-5301969)
chr6 (73-118)||(9908215-9908259)
chr6 (89-122)||(19687499-19687532)
chr6 (73-118)||(32161581-32161625)
chr6 (129-173)||(7418885-7418929)
chr6 (129-173)||(19687477-19687521)
chr6 (129-173)||(33169268-33169312)
[»] scaffold0111 (1 HSPs)
scaffold0111 (129-173)||(38093-38137)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 36513724 - 36514085
Alignment:
Q  1 gaacacatcattttattttatgtttctggactataattgatgcagatgggtcaaacattgatgcatagtttt--taagtaaatttgattct--tttaggt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |  |  ||||||||| |  |||||||    
T  36513724 gaacacatcattttattttatgtttctggactataattgatgcagatgggtcgaacattgatgcatagttttcctccgataatttgattttgttttaggt 36513823  T
Q  97 taattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagtacgttgagta 196  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||    
T  36513824 taattcaatcaatgatgtatgtagttgatagttcattaattgaatgaacttaaaaagcaaaatttatttatatttaagactcgagggagtatgttgagta 36513923  T
Q  197 gtagtgcgatttataaaaatagtccgtgggatcccactcattttaattgtaaaatcattaacataatcttttaaatgccgtttaatttgggaaaacaaac 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  36513924 gtagtgcgatttataaaaatagtccgtgggatcccactcattttaattgtaaaatcattaacataatcttttagatgccgtttaatttgggaaagcaaac 36514023  T
Q  297 nnnnnnnccatcgtgagaaagttaaaccaaggccttaaattt-atactttaaaatttgaatg 357  Q
           ||||| | | ||||||||||||| ||| || |||| |||||||||||||||||||    
T  36514024 ttttttcccatcataaaaaagttaaaccaaagccatagatttaatactttaaaatttgaatg 36514085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 37306898 - 37306981
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||| ||||||||||||||||||| | |  |||  |||||||||||||||| |||||||| |||||||| |||||||||    
T  37306898 ttttaggttcattcaattaatgatgtatgaactatatacatcattaattgaatgaatttaaaaagtaaaatttacttatattta 37306981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 38675247 - 38675162
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat---tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||| || ||||||||||||||||| ||  |||||   |||||||||| |||||||||||||| |||||||| ||||||||    
T  38675247 ttttaggttcatgcaattaatgatgtatgtggtccataatacatcattaattgtatgaacttaaaaagtaaaatttaattatattt 38675162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 46779345 - 46779301
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||    
T  46779345 tcattaattgaatgaacttaaaaagtaaaatttgtttatatttag 46779301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 37306668 - 37306626
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  37306668 attaattgaatgaacctaaaaagtaaaatttatttatatttag 37306626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 37306950 - 37306897
Alignment:
Q  99 attcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaa 152  Q
    |||||||||||||||||| ||||| |||  ||||||||||||||||| ||||||    
T  37306950 attcaattaatgatgtatatagttcatacatcattaattgaatgaacctaaaaa 37306897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 5289756 - 5289712
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||    
T  5289756 tcattaattgaatgaatctaaaaagtaaaatttatttatatttag 5289712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 33659788 - 33659836
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagt 121  Q
    |||| |||||| ||| ||||||||| |||||||||||||||||||||||    
T  33659788 taagcaaattttatttttttaggttcattcaattaatgatgtatgtagt 33659836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 36712105 - 36712061
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||    
T  36712105 tcattaattaaataaacttaaaaagtaaaatttatttatatttag 36712061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 48088042 - 48088105
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaag 153  Q
    ||||| ||| |||||||||||||||||||| ||  |||||| ||||||||||||||| |||||||    
T  48088042 ttttatgttcattcaattaatgatgtatgtggtccataatt-attaattgaatgaacataaaaag 48088105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 9968355 - 9968312
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||    
T  9968355 tcattaattgaatgaacctaaaaagtaaaatttacttatattta 9968312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 33659895 - 33659841
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||| ||| |||||    
T  33659895 taagtaaattttatt-ttttaggtttattcaattaatgatgtatgtggttcataat 33659841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 39294227 - 39294184
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| |||||||  |||||||||||||||||    
T  39294227 tcattaattgaatgaacctaaaaagtcaaatttatttatattta 39294184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 42013200 - 42013157
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    |||||||||||||||| |||||||| |||||||| |||||||||    
T  42013200 tcattaattgaatgaatttaaaaagtaaaatttacttatattta 42013157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 43635944 - 43635905
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  43635944 ttttaggttgattcaattaatgatgtatgtagttcataat 43635905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 50038536 - 50038579
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||    
T  50038536 tcattaattgaatgaacctaaaaagtaaaatttacttatattta 50038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 50045758 - 50045801
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||    
T  50045758 tcattaattgaatgaacctaaaaagtaaaatttacttatattta 50045801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 17028319 - 17028361
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  17028319 tcattaattgaatgaacctaaaaagtaaaatttgtttatattt 17028361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 23329424 - 23329382
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  23329424 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 23329382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 30162665 - 30162623
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  30162665 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 30162623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 32112400 - 32112442
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  32112400 tcattaattgaatgaacttaaaaggtaaaatttgtttatattt 32112442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 33379484 - 33379530
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttagga 175  Q
    ||||||||||||||||| |||||||  |||||| |||||||||||||    
T  33379484 tcattaattgaatgaacctaaaaagtgaaatttgtttatatttagga 33379530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 43087494 - 43087436
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagta 187  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||| | || ||||||||    
T  43087494 tcattaattgaatgaacataaaaaataaaatttgtttatatttagaaatggagggagta 43087436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 51975210 - 51975252
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  51975210 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 51975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 41789044 - 41789000
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  41789044 taagtaaatttgatt-ttttaagtttattcaattaatgatgtatgt 41789000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 48042699 - 48042666
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagtt 122  Q
    ||||||||| ||||||||||||||||||||||||    
T  48042699 ttttaggttcattcaattaatgatgtatgtagtt 48042666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 37252114 - 37252158
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||| |||||||||||||||||  || |||||||||||||||    
T  37252114 tcattaaatgaatgaacttaaaaagtcaattttatttatatttag 37252158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 39754131 - 39754163
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  39754131 ttttaggtttattcaattaatgatgtatgtagt 39754163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 53551681 - 53551725
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||||    
T  53551681 tcattaattgaatgagcttaaaaagtaaaatttgcttatatttag 53551725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 56420539 - 56420507
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  56420539 ttttaggttcattcaattaatgatgtatgtagt 56420507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 56420517 - 56420561
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  56420517 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 56420561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 35607432 - 35607544
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||| ||  ||| |||||||||||||||||| |||||||  ||||||| ||||||||     
T  35607432 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgtggtccata-ttcattaattgaatgaacctaaaaagtcaaatttacttatatttt 35607529  T
Q  173 ggactgaagggagta 187  Q
    ||| || ||||||||    
T  35607530 ggaatggagggagta 35607544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 10041628 - 10041672
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  10041628 tcattaattgaatgaacttaaaaagtaaaatttatttatatttag 10041672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 25668465 - 25668421
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||    
T  25668465 tcattaattgaatgaacctaaaaagcaaaatttgtttatatttag 25668421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 30905210 - 30905252
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  30905210 tcattaattgaatgaacttaaaaagtaaaatttacttatattt 30905252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 34240913 - 34240963
Alignment:
Q  125 taattcattaattgaatgaacttaaaaagcaaaatttatttatatttagga 175  Q
    ||||||||||||||||||||| ||||||  |||||||| ||||||||||||    
T  34240913 taattcattaattgaatgaacctaaaaaataaaatttacttatatttagga 34240963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 32070478 - 32070522
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  32070478 taagtaaatttgatt-ttttaggttcattcaattaatgatgtatgt 32070522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 40739615 - 40739571
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  40739615 taagtaaatttgatt-ttttaggttcattcaattaatgatgtatgt 40739571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 324850 - 324806
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||    
T  324850 tcattaattgaatgaacttaaaaagtaaaatttgcttatatttag 324806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 10099638 - 10099682
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||    
T  10099638 tcattaattgaatgaacctaaaaggtaaaatttatttatatttag 10099682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 29712541 - 29712497
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||    
T  29712541 tcattaattgaatgaacttaaaacgtaaaatttgtttatatttag 29712497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 32473557 - 32473601
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| || |||||||||||| |||||||||||||||||||    
T  32473557 tcattaattaaaagaacttaaaaagtaaaatttatttatatttag 32473601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 42579073 - 42579029
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||    
T  42579073 tcattaattaaatgaatttaaaaagtaaaatttatttatatttag 42579029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 9709690 - 9709729
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  9709690 ttttaggttaattcaattaatgatgtatgtggtttataat 9709729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 27743702 - 27743745
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||    
T  27743702 tcattaattgaatgaatctaaaaagtaaaatttatttatattta 27743745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 28602233 - 28602276
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||    
T  28602233 tcattaaatgaatgaacttaaaaagtaaattttatttatattta 28602276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 85799 - 85753
Alignment:
Q  82 ttgattcttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    |||||| ||||||||| |||||||||||||||||||| ||| |||||    
T  85799 ttgatttttttaggttcattcaattaatgatgtatgtggttaataat 85753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 5144354 - 5144396
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||    
T  5144354 tcattaattaaatgaacctaaaaagtaaaatttatttatattt 5144396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 5205043 - 5204986
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataattca 131  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||| ||  ||||||||    
T  5205043 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgtggtccataattca 5204986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 9709712 - 9709654
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagta 187  Q
    ||||||||||||| ||| ||||||| |||||||  |||||||||| | |||||||||||    
T  9709712 tcattaattgaattaacctaaaaagtaaaatttgcttatatttagaaatgaagggagta 9709654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 17844037 - 17844079
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  17844037 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 17844079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 27327884 - 27327842
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  27327884 tcattaattgaatgaacctaaaaagtaaaatttgtttatattt 27327842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 34466152 - 34466110
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  34466152 tcattaattgaatgaacctaaaaagtaaaatttgtttatattt 34466110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 41145318 - 41145276
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  41145318 tcattaattgaatgaacctaaaaagtaaaatttgtttatattt 41145276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 42142064 - 42142011
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataa 127  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||| ||| ||||    
T  42142064 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgtggttcataa 42142011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 43514810 - 43514768
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  43514810 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 43514768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 45123883 - 45123925
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  45123883 attaattgaatgaacctaaaaagtaaaatttacttatatttag 45123925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 27902333 - 27902378
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    |||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  27902333 taagcaaattttatttttttaggtttattcaattaatgatgtatgt 27902378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 37980608 - 37980656
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagtt 122  Q
    |||||||| |||||| ||||||||| |||||||||||||||||| |||||    
T  37980608 taagtaaaattgatt-ttttaggttcattcaattaatgatgtatatagtt 37980656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 38262009 - 38262053
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||    
T  38262009 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgt 38262053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 921939 - 921892
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  921939 taagtaaatttgatt-ttttaagttcattcaattaatgatgtatctagt 921892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 4898219 - 4898175
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  4898219 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 4898175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 4898251 - 4898295
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||||    
T  4898251 tcattaattgaatgaacctcaaaagtaaaatttgtttatatttag 4898295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 4945613 - 4945569
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  4945613 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 4945569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 4945645 - 4945689
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| | ||||| ||||||| |||||||||||    
T  4945645 tcattaattgaatgaacctcaaaagtaaaatttgtttatatttag 4945689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 8365990 - 8365958
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaattt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  8365990 tcattaattgaatgaacttaaaaagtaaaattt 8365958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 12440720 - 12440760
Alignment:
Q  133 taattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||  ||||||||||| |||||||    
T  12440720 taattgaatgaacttaaaaaataaaatttatttgtatttag 12440760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 24971313 - 24971281
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  24971313 ttttaggttcattcaattaatgatgtatgtagt 24971281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 30202592 - 30202560
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  30202592 ttttaggttcattcaattaatgatgtatgtagt 30202560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 33150107 - 33150139
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  33150107 ttttaggtttattcaattaatgatgtatgtagt 33150139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 34466130 - 34466162
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  34466130 ttttaggttcattcaattaatgatgtatgtagt 34466162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 36490565 - 36490609
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  36490565 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 36490609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 37486026 - 37485982
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  37486026 tcattaattgaatgaacataaaaagtaaaatttgcttatatttag 37485982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 37486085 - 37486129
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  37486085 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 37486129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 17988254 - 17988332
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||| |||||||||||||||||||| ||| |||    ||||||||||||||| ||||||| ||||||| |||||||||    
T  17988254 ttttaggttcattcaattaatgatgtatgtggttcata----attaattgaatgaacctaaaaagtaaaatttgtttatattt 17988332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 40237621 - 40237663
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  40237621 tcattaattgaatgaacttaaaaaataaaatttatttatattt 40237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 52880001 - 52880059
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagta 187  Q
    ||||||||||||||||| |||||||  ||||||| ||||||||||||| | ||||||||    
T  52880001 tcattaattgaatgaacctaaaaagtcaaatttacttatatttaggaccggagggagta 52880059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 168
Target Start/End: Complemental strand, 13145787 - 13145746
Alignment:
Q  127 attcattaattgaatgaacttaaaaagcaaaatttatttata 168  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  13145787 attcattaattgaatgaacttaaaagtcaaaatttatttata 13145746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 4838365 - 4838321
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  4838365 tcattaattgaatgaacctaaaaagtaaaatttgtttatatttag 4838321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 47011298 - 47011254
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  47011298 tcattaattgaatgaacctaaaaagtaaaatttgtttatatttag 47011254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 171
Target Start/End: Original strand, 26059200 - 26059247
Alignment:
Q  124 ataattcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  26059200 ataaatcattaattgaatgaacttaaaaagtaaaatttgcttatattt 26059247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 34061997 - 34061954
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  34061997 tcattaattgaatgaacctaaaaagtaaaatttgtttatattta 34061954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 15278619 - 15278577
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||    
T  15278619 tcattaaatgaatgaacctaaaaagtaaaatttatttatattt 15278577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 12993545 - 12993585
Alignment:
Q  77 taaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  12993545 taaatttgatt-ttttaggttcattcaattaatgatgtatgt 12993585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 46590871 - 46590900
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||||||||||||||||||    
T  46590871 ttttaggttaattcaattaatgatgtatgt 46590900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 52880038 - 52879994
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||    
T  52880038 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgt 52879994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 4838395 - 4838439
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||| ||| ||||||| |||||||||||    
T  4838395 tcattaattgaatgaacctaagaagtaaaatttgtttatatttag 4838439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 5753237 - 5753193
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| ||| ||||||||||| ||||||| |||||||||||    
T  5753237 tcattaattaaataaacttaaaaagtaaaatttgtttatatttag 5753193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 34333002 - 34332958
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    |||||||||||||||||||||||||  || ||| |||||||||||    
T  34333002 tcattaattgaatgaacttaaaaagtcaattttgtttatatttag 34332958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 40341784 - 40341740
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||| | ||||||| |||||||||||    
T  40341784 tcattaattgaatgaacctaaaatgtaaaatttgtttatatttag 40341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 40341762 - 40341794
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  40341762 ttttaggttcattcaattaatgatgtatgtagt 40341794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 47293271 - 47293311
Alignment:
Q  78 aaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    |||||||||| |||||| || ||||||||||||||||||||    
T  47293271 aaatttgatttttttagattcattcaattaatgatgtatgt 47293311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 5442 - 5398
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  5442 tcattaattgaatgaacttaaaaagtaaaatttatttatatttag 5398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 6638350 - 6638394
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  6638350 tcattaattgaatgaacttaaaaagtaaaatttacttatatttag 6638394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 37554401 - 37554357
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||    
T  37554401 tcattaattgaatgaacttaaaaagtaaaatttacttatatttag 37554357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 11784302 - 11784416
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataat--------------tcattaattgaatgaacttaaaaagcaaaa 158  Q
    ||||||||||| ||| ||||||||| ||||||||||| |||||||||||| |||||              ||||||||||||||||||||||||| ||||    
T  11784302 taagtaaattttatttttttaggttcattcaattaataatgtatgtagttcataatatacatcacatacatcattaattgaatgaacttaaaaagtaaaa 11784401  T
Q  159 tttatttatatttag 173  Q
    |||  ||||||||||    
T  11784402 tttgcttatatttag 11784416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 40208563 - 40208621
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagta 187  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||| | || ||||||||    
T  40208563 tcattaattgaataaacttaaaaagtaaaatttacttatatttagaaatggagggagta 40208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 20503337 - 20503304
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagtt 122  Q
    ||||||||||||||||||||||||||||||||||    
T  20503337 ttttaggttaattcaattaatgatgtatgtagtt 20503304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 9247016 - 9246972
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||    
T  9247016 tcattaattgaatgaacataaaaagtaaaatttacttatatttag 9246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 18942040 - 18941996
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  18942040 tcattaattgaatgaacctaaaaagtaaaatttgtttatatttag 18941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 37637323 - 37637279
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||  |||||||| ||||||||||    
T  37637323 tcattaattgaatgaacttaaaaaataaaatttacttatatttag 37637279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 37685024 - 37684980
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||    
T  37685024 tcattaattgaatgaacttaaaaagtaaaatttgcttatatttag 37684980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 9247048 - 9247091
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  9247048 tcattaattgaatgaacctaaaaagtaaaatttgtttatattta 9247091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 14064864 - 14064821
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||    
T  14064864 tcattaattgaatgaacctaaaaagtaaaatttacttatattta 14064821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 24433658 - 24433604
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||| ||| |||||    
T  24433658 taagtaaattttatt-ttttaggttcattcaattaatgatgtatgtggttcataat 24433604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 36792677 - 36792716
Alignment:
Q  132 ttaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  36792677 ttaattgaatgaacttaaaaaataaaatttatttatattt 36792716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 43585549 - 43585506
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  43585549 tcattaattgaatgaacctaaaaagtaaaatttgtttatattta 43585506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 8409749 - 8409791
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||  ||||||| |||||||||||||||||    
T  8409749 tcattaattgaatgaatctaaaaagtaaaatttatttatattt 8409791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 15385872 - 15385830
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  15385872 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 15385830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 15385896 - 15385938
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  15385896 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 15385938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 15966010 - 15965968
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  15966010 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 15965968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 21152642 - 21152600
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  21152642 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 21152600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 21159777 - 21159735
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  21159777 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 21159735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 21163584 - 21163542
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  21163584 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 21163542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 21163616 - 21163658
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  21163616 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 21163658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 33696690 - 33696648
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  33696690 tcattaattgaataaacctaaaaagtaaaatttatttatattt 33696648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 36346843 - 36346801
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  36346843 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 36346801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 36441179 - 36441221
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||||||||||||||| |||||||| |||||||| ||||||||    
T  36441179 tcattaattgaatgaatttaaaaagtaaaatttacttatattt 36441221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 7336941 - 7336985
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  7336941 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 7336985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 19784527 - 19784483
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||| |||||||||||||||||  || |||||||||||||||    
T  19784527 tcattaaatgaatgaacttaaaaagtcaattttatttatatttag 19784483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 20367362 - 20367318
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||  ||||||| ||||||| |||||||||||    
T  20367362 tcattaattgaatgaatctaaaaagtaaaatttgtttatatttag 20367318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 20503265 - 20503297
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  20503265 ttttaggttcattcaattaatgatgtatgtagt 20503297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 27304823 - 27304867
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||  |||||||| ||||||||||    
T  27304823 tcattaattgaatgaacctaaaaattaaaatttacttatatttag 27304867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 35067951 - 35067983
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  35067951 ttttaggttcattcaattaatgatgtatgtagt 35067983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 35172484 - 35172452
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaattt 161  Q
    |||||||||||||||||||||||| ||||||||    
T  35172484 tcattaattgaatgaacttaaaaatcaaaattt 35172452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 40208531 - 40208499
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaattt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  40208531 tcattaattgaatgaacttaaaaagtaaaattt 40208499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 34188404 - 34188447
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  34188404 tcattaattgaatgaacctaaaaagtaaaatttatttatattta 34188447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 7256973 - 7257015
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  7256973 tcattaattgaatgaacttaaaaagtaaaatttacttatattt 7257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 10150886 - 10150941
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagttgataatt 129  Q
    ||||||||||||| | ||||||||| |||||||||||||||||||| ||| ||||||    
T  10150886 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgtggttcataatt 10150941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 29110323 - 29110275
Alignment:
Q  124 ataattcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    |||| ||||||||||||| ||| ||||||| ||||||||||||||||||    
T  29110323 ataaatcattaattgaataaacctaaaaagtaaaatttatttatattta 29110275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 40802257 - 40802213
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||    
T  40802257 tcattaattgaatgaacttaaaaagtaaaatttgcttatatttag 40802213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 5039027 - 5039101
Alignment:
Q  99 attcaattaatgatgtatgtagttgataat--tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||||||||||||||||||| ||| |||    ||||||||||||||||  ||||||| ||||||| |||||||||    
T  5039027 attcaattaatgatgtatgtggttcatatacatcattaattgaatgaaaataaaaagtaaaatttgtttatattt 5039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 34194668 - 34194629
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  34194668 ttttaggttcattcaattaatgatgtatgtagttcataat 34194629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 1875742 - 1875684
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttaggactgaagggagta 187  Q
    ||||||||||||||||| |||||||  ||||||  ||||||||||||| | ||||||||    
T  1875742 tcattaattgaatgaacctaaaaagtcaaatttgcttatatttaggaccggagggagta 1875684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 8568874 - 8568832
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  8568874 tcattaattgaatgaacctaaaaagtaaaatttgtttatattt 8568832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 29450867 - 29450909
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    |||||||||||||| ||||||||  ||||||||||||||||||    
T  29450867 attaattgaatgaatttaaaaagtcaaatttatttatatttag 29450909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 34188372 - 34188330
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| |||||||  ||||||||||||||||    
T  34188372 tcattaattgaatgaacctaaaaagtcaaatttatttatattt 34188330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 35969750 - 35969792
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||    
T  35969750 attaattgaatgaacctaaaaagtaaaatttacttatatttag 35969792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 32241800 - 32241759
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||    
T  32241800 attaattgaatgaacctaaaaagtaaaatttgtttatattta 32241759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 41177975 - 41178019
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||    
T  41177975 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgt 41178019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 15754466 - 15754506
Alignment:
Q  88 cttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  15754466 cttttaggttcattcatttaatgatgtatgtagttcataat 15754506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 35969716 - 35969672
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||  ||||||| |||||||||||    
T  35969716 tcattaattgaatgaacctaaaaattaaaatttgtttatatttag 35969672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 35972425 - 35972381
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||  |||||||  ||||||||||||||||||    
T  35972425 tcattaattgaatgaatctaaaaagtcaaatttatttatatttag 35972381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 31671091 - 31671011
Alignment:
Q  90 tttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    |||||||| |||||||||||||||||||| |   |||  | ||||||||||||||| ||||||| |||||||| |||||||||    
T  31671091 tttaggtttattcaattaatgatgtatgtggc--atacataattaattgaatgaacataaaaagtaaaatttacttatattta 31671011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 46774624 - 46774543
Alignment:
Q  88 cttttaggttaattcaattaatgatgtatgtagttgataattcattaattgaatgaacttaaaaagcaaaatttatttatatt 170  Q
    |||||||||| ||||||||| |||||||||| ||| |||  |||||||   ||||||||||||||| |||||||| |||||||    
T  46774624 cttttaggttcattcaattattgatgtatgtggttcatacatcattaaaa-aatgaacttaaaaagtaaaatttacttatatt 46774543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 47682740 - 47682782
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| ||||||| |||||||||    
T  47682740 tcattaattgaatgaacttaaaaagtaaaatttgtttatattt 47682782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 13846764 - 13846721
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| |||||||| |||||||||    
T  13846764 tcattaattgaatgaacctaaaaagtaaaatttacttatattta 13846721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 19532061 - 19532022
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  19532061 ttttaggttcattcaattaatgatgtatgtagtttataat 19532022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 32389241 - 32389284
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||| |||||||||| ||||||||||||||||| |||||||||    
T  32389241 tcatttattgaatgaatttaaaaagcaaaatttacttatattta 32389284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 36711625 - 36711668
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||    
T  36711625 tcattaattgaatgaaccttaaaagtaaaatttatttatattta 36711668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 45833244 - 45833201
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||    
T  45833244 tcattaattgaatgaacctaaaaagtaaaatttgtttatattta 45833201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 46578373 - 46578334
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  46578373 ttttaggttcattcaattaatgatgtatgtagttcataat 46578334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 3498380 - 3498422
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  3498380 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 3498422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 17882762 - 17882720
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||    
T  17882762 tcattaattaaatgaacttaaaaagtaaaatttacttatattt 17882720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 27942411 - 27942453
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  27942411 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 27942453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 33784114 - 33784072
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||||||||||||||| |||||||| |||||||| ||||||||    
T  33784114 tcattaattgaatgaatttaaaaagtaaaatttacttatattt 33784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 46477219 - 46477261
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||    
T  46477219 tcattaattgaatgaacctaaaaagtaaaatttacttatattt 46477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 48590671 - 48590713
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    |||||||||||||||||||||||||  ||||||| ||||||||    
T  48590671 tcattaattgaatgaacttaaaaagtcaaatttacttatattt 48590713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 33471613 - 33471569
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  33471613 taagtaaattttatt-ttttaggttcattcaattaatgatgtatgt 33471569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 10595508 - 10595555
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagt 121  Q
    |||||||| |||||| ||||||||| |||||||||||||||||| ||||    
T  10595508 taagtaaaattgatt-ttttaggttcattcaattaatgatgtatctagt 10595555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 18732243 - 18732283
Alignment:
Q  88 cttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    |||||||||| |||||||||||||||||||| ||| |||||    
T  18732243 cttttaggttcattcaattaatgatgtatgtggtttataat 18732283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 22332351 - 22332307
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    |||||||||||||||||||||||||  || ||| |||||||||||    
T  22332351 tcattaattgaatgaacttaaaaagacaattttgtttatatttag 22332307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 46221132 - 46221100
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaattt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  46221132 tcattaattgaatgaacttaaaaagtaaaattt 46221100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 48392952 - 48392984
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaattt 161  Q
    ||||||||||||||||||||||||| |||||||    
T  48392952 tcattaattgaatgaacttaaaaagtaaaattt 48392984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 48590639 - 48590595
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| ||||||| ||||||| ||||||| |||||||||||    
T  48590639 tcattaatttaatgaacctaaaaagtaaaatttgtttatatttag 48590595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 21659192 - 21659150
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||| ||||||||    
T  21659192 tcattaattgaatgaacttaaaaagtaaaatttacttatattt 21659150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 19679048 - 19679092
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||    
T  19679048 tcattaattgaatgaacttaaaaagtaaaatttgcttatatttag 19679092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 51256621 - 51256577
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||    
T  51256621 tcattaattgaatgaacctaaaaagtaaaatttgtttatatttag 51256577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 22995782 - 22995825
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||||| |||||||||||||||  |||||||||    
T  22995782 tcattaattgaatgaacctaaaaagcaaaatttgcttatattta 22995825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 39289615 - 39289572
Alignment:
Q  129 tcattaattgaatgaacttaaaaa-gcaaaatttatttatattt 171  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  39289615 tcattaattgaatgaacttaaaaaggtaaaatttatttatattt 39289572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 32833734 - 32833692
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||||||||||| |||||||  ||||||||    
T  32833734 tcattaattgaatgaacttaaaaagtaaaatttgcttatattt 32833692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 50623100 - 50623058
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||    
T  50623100 tcattaattgaatgaacgtaaaaagtaaaatttgtttatattt 50623058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 7933535 - 7933579
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  7933535 taagtaaattttatt-ttttaggtttattcaattaatgatgtatgt 7933579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 40504083 - 40504127
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  40504083 taagtaaatttgatt-tttaaggttcattcaattaatgatgtatgt 40504127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 40760788 - 40760836
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgtagtt 122  Q
    |||||||| |||||| ||||||||| ||||||||||| ||||||||||||    
T  40760788 taagtaaaattgatt-ttttaggttcattcaattaataatgtatgtagtt 40760836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 24599931 - 24599887
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatatttagga 175  Q
    ||||||||||||||| ||||||| |||||||  ||||||||||||    
T  24599931 attaattgaatgaacctaaaaagtaaaatttgcttatatttagga 24599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 26043336 - 26043380
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||||||||||| ||| |||  ||||||||||    
T  26043336 tcattaattgaatgaacttaaaaagtaaattttgcttatatttag 26043380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 42595780 - 42595740
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatattt 171  Q
    ||||||||||||||| ||||||| ||||||| |||||||||    
T  42595780 attaattgaatgaacctaaaaagtaaaatttgtttatattt 42595740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 43333951 - 43333983
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  43333951 ttttaggttcattcaattaatgatgtatgtagt 43333983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 47931797 - 47931765
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  47931797 ttttaggtttattcaattaatgatgtatgtagt 47931765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 54680597 - 54680565
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagt 121  Q
    ||||||||| |||||||||||||||||||||||    
T  54680597 ttttaggttcattcaattaatgatgtatgtagt 54680565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 54985556 - 54985588
Alignment:
Q  90 tttaggttaattcaattaatgatgtatgtagtt 122  Q
    |||||||| ||||||||||||||||||||||||    
T  54985556 tttaggttcattcaattaatgatgtatgtagtt 54985588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 42694 - 42650
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||    
T  42694 tcattaattgaatgaacctaaaaagtaaaatttacttatatttag 42650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 45575 - 45531
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  45575 tcattaattaaatgaacttaaaaagtaaaatttacttatatttag 45531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 31577547 - 31577508
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagttgataat 128  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  31577547 ttttaggttcattcaattaatgatgtatgtagttcataat 31577508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 5301969 - 5301928
Alignment:
Q  131 attaattgaatgaacttaaaaagcaaaatttatttatattta 172  Q
    ||||||||||||||| |||||| ||||||||| |||||||||    
T  5301969 attaattgaatgaacctaaaaatcaaaatttacttatattta 5301928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 9908259 - 9908215
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||    
T  9908259 taagtaaatttgact-ttttaggttcattcaattaatgatgtatgt 9908215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 19687499 - 19687532
Alignment:
Q  89 ttttaggttaattcaattaatgatgtatgtagtt 122  Q
    ||||||||| ||||||||||||||||||||||||    
T  19687499 ttttaggttcattcaattaatgatgtatgtagtt 19687532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 32161581 - 32161625
Alignment:
Q  73 taagtaaatttgattcttttaggttaattcaattaatgatgtatgt 118  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||||    
T  32161581 taagtaaatttgatt-ttttaggttcattcaattaatggtgtatgt 32161625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 7418929 - 7418885
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  7418929 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 7418885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 19687521 - 19687477
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  19687521 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 19687477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 33169268 - 33169312
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||| ||||||||||| |||||||  ||||||||||    
T  33169268 tcattaattgaataaacttaaaaagtaaaatttgcttatatttag 33169312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 38093 - 38137
Alignment:
Q  129 tcattaattgaatgaacttaaaaagcaaaatttatttatatttag 173  Q
    ||||||||||||||||| ||||||| |||||||  ||||||||||    
T  38093 tcattaattgaatgaacctaaaaagtaaaatttgcttatatttag 38137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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