View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_29 (Length: 370)
Name: NF20296_low_29
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_29 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 18294 - 18577
Alignment:
| Q |
13 |
attattctcacggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatg |
112 |
Q |
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| T |
18294 |
attattctcacggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagaggaagaagagacagaggagaatg |
18393 |
T |
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| Q |
113 |
atgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaa |
212 |
Q |
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| T |
18394 |
atgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaa |
18493 |
T |
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| Q |
213 |
gaaaccgatgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaaga |
296 |
Q |
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| T |
18494 |
gaaaccgatgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaaga |
18577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 326
Target Start/End: Complemental strand, 8726 - 8640
Alignment:
| Q |
240 |
tgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttcatggtcatggatgattt |
326 |
Q |
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| T |
8726 |
tgttggaaaaaaggttgttgaagataacgtttctattaagaatggttttgtgaaagatgttgtgacatttatggtaatggacgattt |
8640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 17016778 - 17016449
Alignment:
| Q |
14 |
ttattctcacggctgagttggacga---tgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaa |
110 |
Q |
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| T |
17016778 |
ttattctcacggctgagttggacgacgatgaggatcaagaggaagatgaagaatatgacga------------tgaagaggaagaagagacagaggagga |
17016691 |
T |
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| Q |
111 |
tgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
210 |
Q |
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| T |
17016690 |
tgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
17016591 |
T |
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| Q |
211 |
aagaaaccgatgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttca |
310 |
Q |
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| T |
17016590 |
aagaaaccgatgaaccgagaaaccagttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaagatgttgtgactttca |
17016491 |
T |
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| Q |
311 |
tggtcatggatgatttgtcaattcagcccatgccgaccttat |
352 |
Q |
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| T |
17016490 |
tggtcatggatgatttgtcaattcagcccatgccgaccttat |
17016449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 17547215 - 17546886
Alignment:
| Q |
14 |
ttattctcacggctgagttggacga---tgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaa |
110 |
Q |
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| T |
17547215 |
ttattctcacggctgagttggacgacgatgaggatcaagaggaagatgaagaatatgacga------------tgaagaggaagaagagacagaggagga |
17547128 |
T |
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| Q |
111 |
tgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
210 |
Q |
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| T |
17547127 |
tgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
17547028 |
T |
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| Q |
211 |
aagaaaccgatgaaccgagaaacccgttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgcgaaagatgttgtgactttca |
310 |
Q |
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| T |
17547027 |
aagaaaccgatgaaccgagaaaccagttgtgttggaaagaagtttgatgaggagtacctttcaattaataatggttttgtgaaagatgttgtgactttca |
17546928 |
T |
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| Q |
311 |
tggtcatggatgatttgtcaattcagcccatgccgaccttat |
352 |
Q |
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| T |
17546927 |
tggtcatggatgatttgtcaattcagcccatgccgaccttat |
17546886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 52133476 - 52133430
Alignment:
| Q |
280 |
aatggttttgcgaaagatgttgtgactttcatggtcatggatgattt |
326 |
Q |
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| T |
52133476 |
aatggttttgtgaaagatgttgtgacatttatggtgatggatgattt |
52133430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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