View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_3 (Length: 671)
Name: NF20296_low_3
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 308 - 655
Target Start/End: Complemental strand, 10970282 - 10969935
Alignment:
| Q |
308 |
tggaggatttggtctacggtttagaaatttgagtatgcttgtgtaaaaacttgggttttcaatgaaaaggatgagaattggtaatcatggtgttgggagt |
407 |
Q |
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| T |
10970282 |
tggaggatttggtctacggtttagaaatttgagtatgcttgtgtaaaaacttgggttttcaatgaaaatgatgagaattggtaatcatggtgttgggagt |
10970183 |
T |
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| Q |
408 |
attgtttgtagatgaatttgggtgaaaaggggttaggctgcttggaaacttgggttgtcaaataagggggctgaaaaatccaacttatatggtcaggaac |
507 |
Q |
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| T |
10970182 |
attgtttgtagatgaatttgggtgaaaaggggttaggctgcttggaaacttgggttgtcagataagggggctgaaaaatccaacttatatggtcagggac |
10970083 |
T |
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| Q |
508 |
atgtgcgtcgcatgtggggctacgcatgtcacatgtccaacaagcaaaaaacataattgttgcgtatcgcgtggctggaaatgagtcttcacgtgctcca |
607 |
Q |
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| T |
10970082 |
atgtgcgtcgcatgtggggctacgcatgtcacatgtccaacaagcaaaaaacataattgttgcgtatcgcgtggctggaaatgagtcttcacgtgctcca |
10969983 |
T |
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| Q |
608 |
tcgtgtgtacatgcgtcttgtgaattttccccctttctttcatgatga |
655 |
Q |
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| T |
10969982 |
tcgtgtgtacatgcgtcctgtgaattttccccctttctttcatgatga |
10969935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 10970576 - 10970322
Alignment:
| Q |
14 |
cataggtgggagcttcggtcagttcactttttgttctcttacaaaccatgaatagttgtgttggttaaggtaatggttatatttgtgtctggaagaaaga |
113 |
Q |
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| T |
10970576 |
cataggtgggagcttcggtcagttcactttttgttctcttacaaaccatgaatagttgtgttggttaaggtaatggttatatttgtgtctggaagaaaga |
10970477 |
T |
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| Q |
114 |
tataggggttgtgtacgtagatggattgagagaaaggtattatgatggaatagtaatcttattgtgttggtttagaaaagttgatacgtaggtgtgagtt |
213 |
Q |
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| T |
10970476 |
tataggggttgtgtacgtagatggattgagagaaaggtattatgatggaatagtaatcttattgtgttggtttagaaaagttgatacgtaggtgtgagtt |
10970377 |
T |
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| Q |
214 |
ttgggtagatgcaaagaggattagtatgttcatggtaatttttcttgtttatggt |
268 |
Q |
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| T |
10970376 |
ttgggtagatgcaaagaggattagtatgttcatggtaatttttcttgtttatggt |
10970322 |
T |
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