View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20296_low_31 (Length: 359)
Name: NF20296_low_31
Description: NF20296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20296_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 17243229 - 17243560
Alignment:
| Q |
16 |
acaagcacattcggttttaggacaagccatgacacaaaatggcattgttgtgaatatgactcaactaaattggtatagaaatgggtctggaattgtagta |
115 |
Q |
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| T |
17243229 |
acaagcacattcggttttaggacaagccatgacacaaaatggaattgttgtgaatatgactcaactcaattggtatagaaatgggtctggaattgtagta |
17243328 |
T |
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| Q |
116 |
tctgattgtgatgtgaaaaatcaattaggttgttatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactca |
215 |
Q |
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| T |
17243329 |
tctgattgtgatgtgaaaaatccattaggttgttatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactca |
17243428 |
T |
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| Q |
216 |
cacctctctcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaacttttagatttggaccacaaatctc |
315 |
Q |
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| T |
17243429 |
cacctctctcttggactgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaacttttagatttggaccacaaatctc |
17243528 |
T |
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| Q |
316 |
caatgttcttgaattggatgttatcacaggtt |
347 |
Q |
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| T |
17243529 |
caatgttcttgaattggatgttattacaggtt |
17243560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 291
Target Start/End: Original strand, 17275565 - 17275707
Alignment:
| Q |
149 |
tatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactcacacctctctcttggactgattacttgtatttga |
248 |
Q |
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| T |
17275565 |
tatgttgatgttggaggggaacaactatggattgatgtgttgtatgaaacacttgagtatggacttgcacctgtttcttggactgattatctttacttaa |
17275664 |
T |
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| Q |
249 |
ctgttggtggcactctctctaatgctgggattggtggtcaaac |
291 |
Q |
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| T |
17275665 |
ctattggagggacactctctaatgctggtattagtggacaaac |
17275707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 209 - 337
Target Start/End: Complemental strand, 52454656 - 52454528
Alignment:
| Q |
209 |
ggactcacacctctctcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaacttttagatttggaccac |
308 |
Q |
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| T |
52454656 |
ggacttacaccactttcttggactgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttccgatttggtcctc |
52454557 |
T |
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| Q |
309 |
aaatctccaatgttcttgaattggatgtt |
337 |
Q |
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| T |
52454556 |
aaatttccaatgttcatgaattggatgtt |
52454528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 52443404 - 52443489
Alignment:
| Q |
149 |
tatgttgatgtgggtggagaacaattgtggattgatgttttgaatgctacacttaagcatggactcacacctctctcttggactga |
234 |
Q |
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| T |
52443404 |
tatgttgatgttggaggagaacaactatggattgatgttttgtatgcaacacttgaacatggacttgcacctgtttcttggactga |
52443489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 52630637 - 52630570
Alignment:
| Q |
224 |
tcttggactgattacttgtatttgactgttggtggcactctctctaatgctgggattggtggtcaaac |
291 |
Q |
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| T |
52630637 |
tcttggactgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaac |
52630570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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